Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0019 and SO_A0020 are separated by 33 nucleotides SO_A0020 and SO_A0021 are separated by 32 nucleotides SO_A0021 and higB are separated by 311 nucleotides higB and higA are separated by 74 nucleotides
SOA0019: SOA0019 - ISSod9, DNA-invertase (NCBI ptt file), at 16,733 to 17,290
SOA0019
SO_A0020: SO_A0020 - no description, at 17,324 to 18,154
_A0020
SO_A0021: SO_A0021 - no description, at 18,187 to 18,462
_A0021
SOA0022: higB - proteic killer active protein (NCBI ptt file), at 18,774 to 19,079
higB
SOA0023: higA - proteic killer suppressor protein (NCBI ptt file), at 19,154 to 19,453
higA
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.320 kb on + strand at 17.327 kb on - strand at 17.370 kb on - strand at 17.370 kb on - strand at 17.375 kb on + strand at 17.414 kb on - strand, within SO_A0020 at 17.414 kb on - strand, within SO_A0020 at 17.419 kb on + strand, within SO_A0020 at 17.426 kb on + strand, within SO_A0020 at 17.471 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.484 kb on - strand, within SO_A0020 at 17.489 kb on - strand, within SO_A0020 at 17.489 kb on - strand, within SO_A0020 at 17.528 kb on + strand, within SO_A0020 at 17.542 kb on - strand, within SO_A0020 at 17.609 kb on - strand, within SO_A0020 at 17.616 kb on + strand, within SO_A0020 at 17.654 kb on - strand, within SO_A0020 at 17.685 kb on - strand, within SO_A0020 at 17.685 kb on - strand, within SO_A0020 at 17.735 kb on - strand, within SO_A0020 at 17.735 kb on - strand, within SO_A0020 at 17.745 kb on - strand, within SO_A0020 at 17.763 kb on - strand, within SO_A0020 at 17.771 kb on - strand, within SO_A0020 at 17.863 kb on + strand, within SO_A0020 at 17.871 kb on - strand, within SO_A0020 at 17.871 kb on - strand, within SO_A0020 at 17.927 kb on - strand, within SO_A0020 at 17.998 kb on + strand, within SO_A0020 at 18.019 kb on - strand, within SO_A0020 at 18.032 kb on + strand, within SO_A0020 at 18.032 kb on + strand, within SO_A0020 at 18.082 kb on + strand at 18.082 kb on + strand at 18.090 kb on - strand at 18.092 kb on + strand at 18.100 kb on - strand at 18.193 kb on - strand at 18.411 kb on - strand, within SO_A0021 at 18.423 kb on - strand, within SO_A0021 at 18.450 kb on + strand at 18.456 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.478 kb on - strand at 18.496 kb on + strand at 18.498 kb on + strand at 18.506 kb on + strand at 18.506 kb on - strand at 18.506 kb on - strand at 18.511 kb on + strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.629 kb on + strand at 18.831 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.838 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.847 kb on - strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.874 kb on + strand, within higB at 18.878 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.891 kb on - strand, within higB at 18.891 kb on - strand, within higB at 18.902 kb on + strand, within higB at 18.910 kb on - strand, within higB at 18.910 kb on - strand, within higB at 18.920 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.973 kb on + strand, within higB at 18.973 kb on - strand, within higB at 19.004 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.032 kb on - strand, within higB at 19.057 kb on - strand at 19.070 kb on + strand at 19.070 kb on + strand at 19.078 kb on - strand at 19.103 kb on + strand at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.441 kb on + strand at 19.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 17,320 + -0.0 17,327 - +0.7 17,370 - +0.4 17,370 - -0.3 17,375 + -0.4 17,414 - SO_A0020 0.11 -0.0 17,414 - SO_A0020 0.11 +0.2 17,419 + SO_A0020 0.11 +0.1 17,426 + SO_A0020 0.12 +0.2 17,471 + SO_A0020 0.18 +0.1 17,481 + SO_A0020 0.19 +0.7 17,481 + SO_A0020 0.19 +0.2 17,481 + SO_A0020 0.19 +0.3 17,481 + SO_A0020 0.19 +0.0 17,481 + SO_A0020 0.19 -0.2 17,481 + SO_A0020 0.19 +0.3 17,484 - SO_A0020 0.19 -0.1 17,489 - SO_A0020 0.20 +0.1 17,489 - SO_A0020 0.20 +0.5 17,528 + SO_A0020 0.25 +0.2 17,542 - SO_A0020 0.26 -0.7 17,609 - SO_A0020 0.34 +0.9 17,616 + SO_A0020 0.35 +0.5 17,654 - SO_A0020 0.40 +0.1 17,685 - SO_A0020 0.43 -0.2 17,685 - SO_A0020 0.43 +0.8 17,735 - SO_A0020 0.49 +0.5 17,735 - SO_A0020 0.49 -0.5 17,745 - SO_A0020 0.51 -0.1 17,763 - SO_A0020 0.53 -0.2 17,771 - SO_A0020 0.54 +0.3 17,863 + SO_A0020 0.65 +0.7 17,871 - SO_A0020 0.66 -0.7 17,871 - SO_A0020 0.66 -0.1 17,927 - SO_A0020 0.73 -0.3 17,998 + SO_A0020 0.81 +0.0 18,019 - SO_A0020 0.84 +0.8 18,032 + SO_A0020 0.85 +0.2 18,032 + SO_A0020 0.85 -0.4 18,082 + -1.6 18,082 + +0.1 18,090 - -0.1 18,092 + -0.0 18,100 - -0.1 18,193 - -1.3 18,411 - SO_A0021 0.81 +0.2 18,423 - SO_A0021 0.86 +0.5 18,450 + +0.7 18,456 + -0.5 18,461 + +0.3 18,461 + +0.2 18,461 + +0.4 18,461 + -0.6 18,478 - +0.5 18,496 + +0.3 18,498 + +0.6 18,506 + -0.1 18,506 - -1.2 18,506 - -0.1 18,511 + -0.4 18,511 + +0.5 18,514 + +0.6 18,628 + +0.7 18,628 + +0.3 18,628 + -0.1 18,629 + -1.5 18,831 + higB SOA0022 0.19 -1.0 18,837 + higB SOA0022 0.21 +0.2 18,837 + higB SOA0022 0.21 +0.5 18,837 + higB SOA0022 0.21 -0.4 18,837 + higB SOA0022 0.21 +0.1 18,837 + higB SOA0022 0.21 +0.2 18,837 + higB SOA0022 0.21 -1.7 18,837 + higB SOA0022 0.21 +0.6 18,837 + higB SOA0022 0.21 -0.4 18,837 + higB SOA0022 0.21 -0.4 18,838 + higB SOA0022 0.21 -0.0 18,839 + higB SOA0022 0.21 -0.7 18,839 + higB SOA0022 0.21 +0.3 18,839 + higB SOA0022 0.21 -0.4 18,847 - higB SOA0022 0.24 -0.6 18,854 + higB SOA0022 0.26 -0.1 18,854 + higB SOA0022 0.26 -0.2 18,854 + higB SOA0022 0.26 +1.1 18,854 + higB SOA0022 0.26 -0.0 18,854 + higB SOA0022 0.26 -0.2 18,861 + higB SOA0022 0.28 +0.4 18,861 + higB SOA0022 0.28 +0.1 18,861 + higB SOA0022 0.28 -0.3 18,861 + higB SOA0022 0.28 -0.5 18,874 + higB SOA0022 0.33 -0.5 18,878 + higB SOA0022 0.34 +0.1 18,883 + higB SOA0022 0.36 -0.3 18,883 + higB SOA0022 0.36 +0.1 18,883 + higB SOA0022 0.36 -1.0 18,883 + higB SOA0022 0.36 +1.6 18,883 + higB SOA0022 0.36 -0.2 18,883 + higB SOA0022 0.36 -0.0 18,883 + higB SOA0022 0.36 -0.1 18,883 + higB SOA0022 0.36 -0.1 18,891 - higB SOA0022 0.38 +0.0 18,891 - higB SOA0022 0.38 +0.5 18,902 + higB SOA0022 0.42 +1.2 18,910 - higB SOA0022 0.44 +0.5 18,910 - higB SOA0022 0.44 +0.6 18,920 + higB SOA0022 0.48 +0.7 18,965 + higB SOA0022 0.62 -0.1 18,965 + higB SOA0022 0.62 +0.9 18,965 + higB SOA0022 0.62 +0.5 18,965 + +2.1 18,965 + higB SOA0022 0.62 -0.4 18,965 + higB SOA0022 0.62 -2.6 18,965 + higB SOA0022 0.62 +0.4 18,965 + higB SOA0022 0.62 -0.4 18,965 + higB SOA0022 0.62 +0.3 18,965 + higB SOA0022 0.62 -0.1 18,965 + higB SOA0022 0.62 -0.4 18,965 + higB SOA0022 0.62 +0.6 18,965 + higB SOA0022 0.62 -1.2 18,965 + higB SOA0022 0.62 +0.5 18,973 + higB SOA0022 0.65 +0.5 18,973 - higB SOA0022 0.65 -0.1 19,004 + higB SOA0022 0.75 +0.3 19,024 + higB SOA0022 0.82 +0.7 19,024 + higB SOA0022 0.82 +0.5 19,032 - higB SOA0022 0.84 +1.0 19,057 - +0.5 19,070 + -0.0 19,070 + -0.0 19,078 - -0.2 19,103 + -1.3 19,394 + higA SOA0023 0.80 +0.9 19,394 + higA SOA0023 0.80 -0.1 19,394 + higA SOA0023 0.80 -0.6 19,394 + higA SOA0023 0.80 -0.8 19,394 + higA SOA0023 0.80 +0.2 19,412 + higA SOA0023 0.86 +1.2 19,412 + higA SOA0023 0.86 -0.3 19,412 + higA SOA0023 0.86 -0.7 19,412 + +1.6 19,412 + higA SOA0023 0.86 -0.1 19,412 + higA SOA0023 0.86 -0.7 19,412 + higA SOA0023 0.86 +0.1 19,412 + higA SOA0023 0.86 -1.4 19,412 + higA SOA0023 0.86 -0.6 19,412 + higA SOA0023 0.86 -0.5 19,441 + +0.8 19,447 + +0.2
Or see this region's nucleotide sequence