Strain Fitness in Shewanella oneidensis MR-1 around SOA0030

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO_A0028 and SOA0029 overlap by 810 nucleotidesSOA0029 and SOA0030 are separated by 70 nucleotidesSOA0030 and SOA0031 are separated by 288 nucleotides SO_A0028: SO_A0028 - ISSod1, transposase OrfA (NCBI), at 21,138 to 22,297 _A0028 SOA0029: SOA0029 - ISSod1, transposase OrfB (NCBI ptt file), at 21,488 to 22,297 SOA0029 SOA0030: SOA0030 - hypothetical protein (NCBI ptt file), at 22,368 to 22,490 SOA0030 SOA0031: SOA0031 - partition protein, ParB family, putative (NCBI ptt file), at 22,779 to 24,653 SOA0031 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1at 22.286 kb on + strandat 22.291 kb on + strandat 22.291 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.296 kb on + strandat 22.301 kb on + strandat 22.345 kb on + strandat 22.356 kb on + strandat 22.366 kb on + strandat 22.366 kb on + strandat 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.381 kb on + strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.389 kb on - strand, within SOA0030at 22.518 kb on - strandat 22.552 kb on + strandat 22.563 kb on + strandat 22.587 kb on - strandat 22.628 kb on + strandat 22.636 kb on - strandat 22.636 kb on - strandat 22.638 kb on + strandat 22.642 kb on + strandat 22.650 kb on - strandat 22.680 kb on - strandat 22.797 kb on - strandat 22.852 kb on - strandat 22.863 kb on - strandat 22.908 kb on - strandat 22.924 kb on - strandat 22.935 kb on + strandat 22.982 kb on - strand, within SOA0031at 23.021 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.088 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.089 kb on + strand, within SOA0031at 23.095 kb on + strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.096 kb on - strand, within SOA0031at 23.097 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.098 kb on - strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.100 kb on + strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.108 kb on - strand, within SOA0031at 23.113 kb on + strand, within SOA0031at 23.121 kb on - strand, within SOA0031at 23.127 kb on - strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.132 kb on + strand, within SOA0031at 23.140 kb on - strand, within SOA0031at 23.178 kb on - strand, within SOA0031at 23.189 kb on + strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.236 kb on - strand, within SOA0031at 23.243 kb on + strand, within SOA0031at 23.261 kb on + strand, within SOA0031at 23.300 kb on + strand, within SOA0031at 23.317 kb on + strand, within SOA0031at 23.389 kb on + strand, within SOA0031at 23.389 kb on + strand, within SOA0031at 23.394 kb on + strand, within SOA0031at 23.397 kb on - strand, within SOA0031at 23.402 kb on - strand, within SOA0031at 23.402 kb on - strand, within SOA0031at 23.416 kb on - strand, within SOA0031at 23.437 kb on - strand, within SOA0031at 23.439 kb on + strand, within SOA0031

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
22,286 + -1.1
22,291 + +0.4
22,291 + -0.5
22,296 + +1.0
22,296 + -0.2
22,296 + -0.2
22,301 + +1.0
22,345 + -0.0
22,356 + -0.2
22,366 + -0.6
22,366 + -0.6
22,381 + SOA0030 0.11 -0.3
22,381 + SOA0030 0.11 +0.4
22,381 + SOA0030 0.11 +0.7
22,381 + SOA0030 0.11 +0.6
22,381 + SOA0030 0.11 +0.9
22,389 - SOA0030 0.17 +0.7
22,389 - SOA0030 0.17 +0.3
22,389 - SOA0030 0.17 +0.2
22,389 - SOA0030 0.17 -0.4
22,389 - SOA0030 0.17 -0.9
22,389 - SOA0030 0.17 +0.1
22,518 - +0.4
22,552 + +0.3
22,563 + +0.0
22,587 - +0.5
22,628 + +0.1
22,636 - -1.0
22,636 - -0.2
22,638 + -0.4
22,642 + +0.1
22,650 - +0.4
22,680 - -1.2
22,797 - -1.0
22,852 - +0.2
22,863 - +0.6
22,908 - -1.2
22,924 - -0.6
22,935 + -1.9
22,982 - SOA0031 0.11 -0.0
23,021 + SOA0031 0.13 +0.4
23,088 + SOA0031 0.16 -0.2
23,088 + SOA0031 0.16 +0.3
23,088 + SOA0031 0.16 +0.4
23,088 + SOA0031 0.16 +0.2
23,088 + SOA0031 0.16 +1.0
23,088 + SOA0031 0.16 +0.7
23,088 + SOA0031 0.16 -0.1
23,088 + SOA0031 0.16 +0.7
23,088 + SOA0031 0.16 +0.1
23,088 + SOA0031 0.16 -0.8
23,088 + SOA0031 0.16 +0.0
23,088 + SOA0031 0.16 -0.1
23,089 + SOA0031 0.17 -0.3
23,089 + SOA0031 0.17 +0.2
23,095 + SOA0031 0.17 +0.3
23,096 - SOA0031 0.17 +0.5
23,096 - SOA0031 0.17 +0.5
23,096 - SOA0031 0.17 -0.3
23,096 - SOA0031 0.17 +0.0
23,097 - SOA0031 0.17 -2.3
23,098 - SOA0031 0.17 +0.6
23,098 - SOA0031 0.17 -0.5
23,100 + SOA0031 0.17 +0.3
23,100 + SOA0031 0.17 +0.6
23,100 + SOA0031 0.17 -0.6
23,100 + SOA0031 0.17 -1.0
23,100 + SOA0031 0.17 -0.0
23,100 + SOA0031 0.17 +0.6
23,100 + SOA0031 0.17 -0.2
23,108 - SOA0031 0.18 +0.8
23,108 - SOA0031 0.18 +0.3
23,113 + SOA0031 0.18 +0.6
23,121 - SOA0031 0.18 +0.1
23,127 - SOA0031 0.19 +0.9
23,132 + SOA0031 0.19 +0.5
23,132 + SOA0031 0.19 +0.2
23,140 - SOA0031 0.19 +0.5
23,178 - SOA0031 0.21 +1.3
23,189 + SOA0031 0.22 -0.0
23,236 - SOA0031 0.24 +0.1
23,236 - SOA0031 0.24 +0.1
23,243 + SOA0031 0.25 -0.0
23,261 + SOA0031 0.26 +0.8
23,300 + SOA0031 0.28 +1.2
23,317 + SOA0031 0.29 +0.1
23,389 + SOA0031 0.33 +0.2
23,389 + SOA0031 0.33 -0.3
23,394 + SOA0031 0.33 -0.9
23,397 - SOA0031 0.33 +0.1
23,402 - SOA0031 0.33 +0.5
23,402 - SOA0031 0.33 -0.4
23,416 - SOA0031 0.34 -0.9
23,437 - SOA0031 0.35 +0.2
23,439 + SOA0031 0.35 +1.1

Or see this region's nucleotide sequence