Strain Fitness in Shewanella oneidensis MR-1 around SO4402

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,593,690	-				+0.4
4,593,860	+	rbn	SO4401	0.21	+0.5
4,593,926	-	rbn	SO4401	0.28	+0.1
4,594,063	-	rbn	SO4401	0.44	+0.3
4,594,067	+	rbn	SO4401	0.44	+0.8
4,594,067	+	rbn	SO4401	0.44	+0.0
4,594,075	-	rbn	SO4401	0.45	+0.0
4,594,075	-	rbn	SO4401	0.45	-0.0
4,594,075	-	rbn	SO4401	0.45	-0.5
4,594,098	+	rbn	SO4401	0.48	+0.1
4,594,106	-	rbn	SO4401	0.49	+0.5
4,594,111	-	rbn	SO4401	0.49	+0.3
4,594,245	+	rbn	SO4401	0.64	+0.1
4,594,245	+	rbn	SO4401	0.64	+0.8
4,594,245	+	rbn	SO4401	0.64	+1.2
4,594,253	-	rbn	SO4401	0.65	+0.7
4,594,253	-	rbn	SO4401	0.65	+0.4
4,594,417	-	rbn	SO4401	0.84	-0.5
4,594,428	-	rbn	SO4401	0.85	-0.3
4,594,430	+	rbn	SO4401	0.85	-1.2
4,594,435	+	rbn	SO4401	0.86	-0.1
4,594,512	+				-0.3
4,594,521	-				-0.9
4,594,593	+				+0.7
4,594,724	-		SO4402	0.37	+1.1
4,594,743	+		SO4402	0.45	+0.3
4,594,764	+		SO4402	0.55	+0.6
4,594,779	+		SO4402	0.61	-0.0
4,594,803	+		SO4402	0.72	+1.0
4,594,823	+		SO4402	0.81	+0.5
4,594,831	-		SO4402	0.84	-0.3
4,594,919	-				+0.1
4,594,919	-				-0.6
4,594,919	-				-1.6
4,594,958	+		SO4403	0.12	+0.7
4,594,958	+		SO4403	0.12	-0.0
4,594,966	-		SO4403	0.13	+0.1
4,594,966	-		SO4403	0.13	+0.4
4,595,017	+		SO4403	0.20	+0.8
4,595,017	+		SO4403	0.20	+0.2
4,595,017	+		SO4403	0.20	+0.4
4,595,017	+		SO4403	0.20	+0.1
4,595,017	+		SO4403	0.20	+0.0
4,595,017	+		SO4403	0.20	-0.3
4,595,017	+		SO4403	0.20	+0.5
4,595,017	+		SO4403	0.20	-0.5
4,595,025	-		SO4403	0.22	-0.6
4,595,025	-		SO4403	0.22	+0.2
4,595,144	+		SO4403	0.39	+0.4
4,595,164	-		SO4403	0.42	+0.2
4,595,219	+		SO4403	0.51	+0.1
4,595,228	-		SO4403	0.52	+0.5
4,595,259	+		SO4403	0.57	+0.2
4,595,259	+		SO4403	0.57	-1.4
4,595,264	+		SO4403	0.57	+1.7
4,595,630	-				+0.6
4,595,830	+				-0.2
4,595,830	+				+0.6
4,595,839	+				+0.7
4,595,839	+				+0.8
4,595,847	-				+0.1
4,595,847	-				-0.2
4,595,847	-				+0.1
4,595,847	-				+0.7
4,595,847	-				+0.8