Strain Fitness in Shewanella oneidensis MR-1 around SO4263

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4261 and SO4262 are separated by 380 nucleotidesSO4262 and SO4263 overlap by 4 nucleotidesSO4263 and hsdS-2 are separated by 10 nucleotides SO4261: SO4261 - hypothetical protein (NCBI ptt file), at 4,437,386 to 4,438,036 SO4261 SO4262: SO4262 - hypothetical protein (NCBI ptt file), at 4,438,417 to 4,438,914 SO4262 SO4263: SO4263 - conserved hypothetical protein (NCBI ptt file), at 4,438,911 to 4,439,615 SO4263 SO4264: hsdS-2 - type I restriction-modification system, S subunit (NCBI ptt file), at 4,439,626 to 4,441,113 hsdS-2 Position (kb) 4438 4439 4440Strain fitness (log2 ratio) -2 -1 0 1at 4437.917 kb on - strand, within SO4261at 4437.930 kb on - strand, within SO4261at 4438.011 kb on - strandat 4438.049 kb on + strandat 4438.089 kb on - strandat 4438.089 kb on - strandat 4438.091 kb on + strandat 4438.110 kb on + strandat 4438.110 kb on + strandat 4438.110 kb on + strandat 4438.175 kb on + strandat 4438.175 kb on + strandat 4438.204 kb on + strandat 4438.213 kb on + strandat 4438.213 kb on + strandat 4438.227 kb on - strandat 4438.237 kb on - strandat 4438.244 kb on - strandat 4438.257 kb on - strandat 4438.257 kb on - strandat 4438.315 kb on + strandat 4438.315 kb on + strandat 4438.325 kb on + strandat 4438.325 kb on + strandat 4438.333 kb on - strandat 4438.341 kb on + strandat 4438.349 kb on - strandat 4438.362 kb on - strandat 4438.362 kb on - strandat 4438.401 kb on + strandat 4438.405 kb on + strandat 4438.409 kb on - strandat 4438.485 kb on + strand, within SO4262at 4438.496 kb on + strand, within SO4262at 4438.496 kb on + strand, within SO4262at 4438.504 kb on - strand, within SO4262at 4438.543 kb on - strand, within SO4262at 4438.575 kb on + strand, within SO4262at 4438.579 kb on - strand, within SO4262at 4438.603 kb on - strand, within SO4262at 4438.618 kb on - strand, within SO4262at 4438.664 kb on - strand, within SO4262at 4438.666 kb on + strand, within SO4262at 4438.674 kb on - strand, within SO4262at 4438.690 kb on - strand, within SO4262at 4438.699 kb on + strand, within SO4262at 4438.704 kb on + strand, within SO4262at 4438.707 kb on - strand, within SO4262at 4438.707 kb on - strand, within SO4262at 4438.744 kb on - strand, within SO4262at 4438.771 kb on - strand, within SO4262at 4438.855 kb on + strand, within SO4262at 4438.873 kb on + strandat 4438.881 kb on - strandat 4438.895 kb on + strandat 4438.907 kb on - strandat 4438.907 kb on - strandat 4438.916 kb on + strandat 4438.918 kb on - strandat 4438.918 kb on - strandat 4438.967 kb on - strandat 4438.990 kb on - strand, within SO4263at 4438.997 kb on + strand, within SO4263at 4439.039 kb on + strand, within SO4263at 4439.053 kb on + strand, within SO4263at 4439.053 kb on + strand, within SO4263at 4439.061 kb on - strand, within SO4263at 4439.062 kb on - strand, within SO4263at 4439.068 kb on - strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.096 kb on + strand, within SO4263at 4439.101 kb on + strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strandat 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.104 kb on - strand, within SO4263at 4439.109 kb on - strand, within SO4263at 4439.121 kb on - strand, within SO4263at 4439.141 kb on + strand, within SO4263at 4439.141 kb on + strand, within SO4263at 4439.149 kb on - strand, within SO4263at 4439.149 kb on - strand, within SO4263at 4439.249 kb on + strand, within SO4263at 4439.292 kb on - strand, within SO4263at 4439.364 kb on - strand, within SO4263at 4439.425 kb on - strand, within SO4263at 4439.425 kb on - strand, within SO4263at 4439.433 kb on - strand, within SO4263at 4439.454 kb on + strand, within SO4263at 4439.454 kb on + strand, within SO4263at 4439.462 kb on - strand, within SO4263at 4439.467 kb on - strand, within SO4263at 4439.470 kb on + strand, within SO4263at 4439.478 kb on - strand, within SO4263at 4439.484 kb on - strand, within SO4263at 4439.484 kb on - strand, within SO4263at 4439.484 kb on - strand, within SO4263at 4439.538 kb on + strand, within SO4263at 4439.546 kb on - strandat 4439.547 kb on + strandat 4439.547 kb on - strandat 4439.604 kb on + strandat 4439.617 kb on + strandat 4439.618 kb on + strandat 4439.618 kb on + strandat 4439.618 kb on + strandat 4439.623 kb on + strandat 4439.624 kb on + strandat 4439.658 kb on - strandat 4439.732 kb on - strandat 4439.732 kb on - strandat 4439.732 kb on - strandat 4439.744 kb on + strandat 4439.751 kb on + strandat 4439.752 kb on - strandat 4439.765 kb on + strandat 4439.782 kb on - strand, within hsdS-2at 4439.813 kb on + strand, within hsdS-2at 4439.813 kb on + strand, within hsdS-2at 4439.813 kb on + strand, within hsdS-2at 4439.813 kb on + strand, within hsdS-2at 4439.818 kb on + strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.821 kb on - strand, within hsdS-2at 4439.826 kb on - strand, within hsdS-2at 4439.832 kb on - strand, within hsdS-2at 4439.846 kb on + strand, within hsdS-2at 4439.854 kb on + strand, within hsdS-2at 4439.856 kb on - strand, within hsdS-2at 4439.911 kb on - strand, within hsdS-2at 4439.985 kb on + strand, within hsdS-2at 4440.012 kb on + strand, within hsdS-2at 4440.030 kb on - strand, within hsdS-2at 4440.032 kb on + strand, within hsdS-2at 4440.032 kb on + strand, within hsdS-2at 4440.077 kb on + strand, within hsdS-2at 4440.077 kb on + strand, within hsdS-2at 4440.077 kb on + strand, within hsdS-2at 4440.085 kb on - strand, within hsdS-2at 4440.085 kb on - strand, within hsdS-2at 4440.085 kb on - strand, within hsdS-2at 4440.129 kb on + strand, within hsdS-2at 4440.150 kb on + strand, within hsdS-2at 4440.150 kb on + strand, within hsdS-2at 4440.150 kb on + strand, within hsdS-2at 4440.158 kb on - strand, within hsdS-2at 4440.236 kb on + strand, within hsdS-2at 4440.241 kb on + strand, within hsdS-2at 4440.244 kb on - strand, within hsdS-2at 4440.245 kb on - strand, within hsdS-2at 4440.279 kb on + strand, within hsdS-2at 4440.282 kb on - strand, within hsdS-2at 4440.307 kb on + strand, within hsdS-2at 4440.312 kb on + strand, within hsdS-2at 4440.327 kb on - strand, within hsdS-2at 4440.332 kb on + strand, within hsdS-2at 4440.332 kb on + strand, within hsdS-2at 4440.332 kb on + strand, within hsdS-2at 4440.332 kb on + strand, within hsdS-2at 4440.332 kb on + strand, within hsdS-2at 4440.333 kb on + strand, within hsdS-2at 4440.335 kb on - strand, within hsdS-2at 4440.340 kb on - strand, within hsdS-2at 4440.340 kb on - strand, within hsdS-2at 4440.343 kb on + strand, within hsdS-2at 4440.346 kb on - strand, within hsdS-2at 4440.351 kb on - strand, within hsdS-2at 4440.356 kb on + strand, within hsdS-2at 4440.364 kb on - strand, within hsdS-2at 4440.364 kb on - strand, within hsdS-2at 4440.381 kb on + strand, within hsdS-2at 4440.387 kb on - strand, within hsdS-2at 4440.389 kb on - strand, within hsdS-2at 4440.419 kb on - strand, within hsdS-2at 4440.437 kb on + strand, within hsdS-2at 4440.437 kb on + strand, within hsdS-2at 4440.437 kb on + strand, within hsdS-2at 4440.445 kb on - strand, within hsdS-2at 4440.445 kb on - strand, within hsdS-2at 4440.447 kb on - strand, within hsdS-2at 4440.452 kb on - strand, within hsdS-2at 4440.459 kb on + strand, within hsdS-2at 4440.581 kb on + strand, within hsdS-2at 4440.581 kb on + strand, within hsdS-2at 4440.589 kb on - strand, within hsdS-2at 4440.591 kb on + strand, within hsdS-2

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,437,917 - SO4261 0.82 +0.5
4,437,930 - SO4261 0.84 -0.1
4,438,011 - +0.9
4,438,049 + +0.6
4,438,089 - +0.4
4,438,089 - -0.1
4,438,091 + -0.4
4,438,110 + +0.2
4,438,110 + +0.6
4,438,110 + -1.0
4,438,175 + -0.3
4,438,175 + +0.4
4,438,204 + +0.4
4,438,213 + -0.0
4,438,213 + -0.2
4,438,227 - +0.5
4,438,237 - -0.2
4,438,244 - +0.0
4,438,257 - +0.2
4,438,257 - -0.4
4,438,315 + +0.9
4,438,315 + +0.0
4,438,325 + +0.0
4,438,325 + -0.4
4,438,333 - +0.2
4,438,341 + -0.6
4,438,349 - -0.1
4,438,362 - +0.2
4,438,362 - +0.3
4,438,401 + -1.1
4,438,405 + +0.3
4,438,409 - -0.6
4,438,485 + SO4262 0.14 +0.4
4,438,496 + SO4262 0.16 -0.3
4,438,496 + SO4262 0.16 +0.6
4,438,504 - SO4262 0.17 +0.5
4,438,543 - SO4262 0.25 -1.1
4,438,575 + SO4262 0.32 -0.2
4,438,579 - SO4262 0.33 -1.6
4,438,603 - SO4262 0.37 -0.2
4,438,618 - SO4262 0.40 -0.3
4,438,664 - SO4262 0.50 -0.6
4,438,666 + SO4262 0.50 -0.0
4,438,674 - SO4262 0.52 -0.0
4,438,690 - SO4262 0.55 +0.3
4,438,699 + SO4262 0.57 -0.1
4,438,704 + SO4262 0.58 -0.9
4,438,707 - SO4262 0.58 -0.3
4,438,707 - SO4262 0.58 +0.5
4,438,744 - SO4262 0.66 +0.4
4,438,771 - SO4262 0.71 +0.4
4,438,855 + SO4262 0.88 +1.0
4,438,873 + +0.5
4,438,881 - +0.5
4,438,895 + +0.2
4,438,907 - +0.6
4,438,907 - -0.4
4,438,916 + +0.6
4,438,918 - +0.1
4,438,918 - +0.2
4,438,967 - -0.4
4,438,990 - SO4263 0.11 -0.2
4,438,997 + SO4263 0.12 -0.1
4,439,039 + SO4263 0.18 +0.6
4,439,053 + SO4263 0.20 -0.1
4,439,053 + SO4263 0.20 +0.2
4,439,061 - SO4263 0.21 -0.3
4,439,062 - SO4263 0.21 -0.0
4,439,068 - SO4263 0.22 +0.4
4,439,096 + SO4263 0.26 +0.7
4,439,096 + SO4263 0.26 +0.1
4,439,096 + SO4263 0.26 +0.0
4,439,096 + SO4263 0.26 +0.3
4,439,096 + SO4263 0.26 +0.6
4,439,096 + SO4263 0.26 -0.1
4,439,096 + SO4263 0.26 -0.3
4,439,096 + SO4263 0.26 +0.1
4,439,101 + SO4263 0.27 +0.8
4,439,104 - SO4263 0.27 -0.3
4,439,104 - +1.6
4,439,104 - SO4263 0.27 +0.8
4,439,104 - SO4263 0.27 +0.8
4,439,104 - SO4263 0.27 +0.3
4,439,104 - SO4263 0.27 -0.8
4,439,104 - SO4263 0.27 +0.6
4,439,104 - SO4263 0.27 +0.0
4,439,104 - SO4263 0.27 +0.2
4,439,109 - SO4263 0.28 +0.3
4,439,121 - SO4263 0.30 +0.3
4,439,141 + SO4263 0.33 +0.1
4,439,141 + SO4263 0.33 +1.4
4,439,149 - SO4263 0.34 +0.0
4,439,149 - SO4263 0.34 +0.2
4,439,249 + SO4263 0.48 -0.2
4,439,292 - SO4263 0.54 -0.2
4,439,364 - SO4263 0.64 +1.2
4,439,425 - SO4263 0.73 +0.5
4,439,425 - SO4263 0.73 -0.1
4,439,433 - SO4263 0.74 +0.3
4,439,454 + SO4263 0.77 +0.6
4,439,454 + SO4263 0.77 +1.0
4,439,462 - SO4263 0.78 -0.0
4,439,467 - SO4263 0.79 +0.5
4,439,470 + SO4263 0.79 -0.5
4,439,478 - SO4263 0.80 +0.2
4,439,484 - SO4263 0.81 +0.0
4,439,484 - SO4263 0.81 +0.4
4,439,484 - SO4263 0.81 +0.2
4,439,538 + SO4263 0.89 -0.1
4,439,546 - -0.0
4,439,547 + -0.3
4,439,547 - -0.3
4,439,604 + +0.3
4,439,617 + +0.6
4,439,618 + -0.8
4,439,618 + +0.1
4,439,618 + +1.5
4,439,623 + +0.7
4,439,624 + -0.4
4,439,658 - +0.4
4,439,732 - -0.4
4,439,732 - +0.3
4,439,732 - +0.1
4,439,744 + +0.2
4,439,751 + -0.1
4,439,752 - -0.9
4,439,765 + +0.2
4,439,782 - hsdS-2 SO4264 0.10 +0.0
4,439,813 + hsdS-2 SO4264 0.13 +0.2
4,439,813 + hsdS-2 SO4264 0.13 -0.0
4,439,813 + hsdS-2 SO4264 0.13 +0.4
4,439,813 + hsdS-2 SO4264 0.13 +0.0
4,439,818 + hsdS-2 SO4264 0.13 +0.5
4,439,821 - hsdS-2 SO4264 0.13 +0.2
4,439,821 - hsdS-2 SO4264 0.13 -0.1
4,439,821 - hsdS-2 SO4264 0.13 +0.1
4,439,821 - hsdS-2 SO4264 0.13 -1.1
4,439,821 - hsdS-2 SO4264 0.13 -0.5
4,439,821 - hsdS-2 SO4264 0.13 +0.3
4,439,821 - hsdS-2 SO4264 0.13 -0.1
4,439,826 - hsdS-2 SO4264 0.13 +0.2
4,439,832 - hsdS-2 SO4264 0.14 +0.5
4,439,846 + hsdS-2 SO4264 0.15 +0.4
4,439,854 + hsdS-2 SO4264 0.15 -0.0
4,439,856 - hsdS-2 SO4264 0.15 -0.1
4,439,911 - hsdS-2 SO4264 0.19 -0.3
4,439,985 + hsdS-2 SO4264 0.24 +0.9
4,440,012 + hsdS-2 SO4264 0.26 -0.9
4,440,030 - hsdS-2 SO4264 0.27 +0.3
4,440,032 + hsdS-2 SO4264 0.27 -1.9
4,440,032 + hsdS-2 SO4264 0.27 +0.2
4,440,077 + hsdS-2 SO4264 0.30 +0.2
4,440,077 + hsdS-2 SO4264 0.30 +0.2
4,440,077 + hsdS-2 SO4264 0.30 -1.5
4,440,085 - hsdS-2 SO4264 0.31 -0.0
4,440,085 - hsdS-2 SO4264 0.31 +0.6
4,440,085 - hsdS-2 SO4264 0.31 +0.7
4,440,129 + hsdS-2 SO4264 0.34 -0.3
4,440,150 + hsdS-2 SO4264 0.35 -0.1
4,440,150 + hsdS-2 SO4264 0.35 +0.1
4,440,150 + hsdS-2 SO4264 0.35 +0.2
4,440,158 - hsdS-2 SO4264 0.36 +1.1
4,440,236 + hsdS-2 SO4264 0.41 -0.4
4,440,241 + hsdS-2 SO4264 0.41 +0.1
4,440,244 - hsdS-2 SO4264 0.42 -0.2
4,440,245 - hsdS-2 SO4264 0.42 -0.5
4,440,279 + hsdS-2 SO4264 0.44 +0.0
4,440,282 - hsdS-2 SO4264 0.44 +0.6
4,440,307 + hsdS-2 SO4264 0.46 +1.1
4,440,312 + hsdS-2 SO4264 0.46 -0.7
4,440,327 - hsdS-2 SO4264 0.47 +0.1
4,440,332 + hsdS-2 SO4264 0.47 +0.3
4,440,332 + hsdS-2 SO4264 0.47 -0.2
4,440,332 + hsdS-2 SO4264 0.47 +0.7
4,440,332 + hsdS-2 SO4264 0.47 +0.1
4,440,332 + hsdS-2 SO4264 0.47 +1.2
4,440,333 + hsdS-2 SO4264 0.48 +0.8
4,440,335 - hsdS-2 SO4264 0.48 +0.0
4,440,340 - hsdS-2 SO4264 0.48 -0.1
4,440,340 - hsdS-2 SO4264 0.48 -0.5
4,440,343 + hsdS-2 SO4264 0.48 -0.1
4,440,346 - hsdS-2 SO4264 0.48 -0.6
4,440,351 - hsdS-2 SO4264 0.49 -0.7
4,440,356 + hsdS-2 SO4264 0.49 +0.1
4,440,364 - hsdS-2 SO4264 0.50 +0.2
4,440,364 - hsdS-2 SO4264 0.50 -1.0
4,440,381 + hsdS-2 SO4264 0.51 +0.0
4,440,387 - hsdS-2 SO4264 0.51 +0.3
4,440,389 - hsdS-2 SO4264 0.51 +0.5
4,440,419 - hsdS-2 SO4264 0.53 +0.0
4,440,437 + hsdS-2 SO4264 0.55 +0.6
4,440,437 + hsdS-2 SO4264 0.55 +0.0
4,440,437 + hsdS-2 SO4264 0.55 -0.0
4,440,445 - hsdS-2 SO4264 0.55 -0.2
4,440,445 - hsdS-2 SO4264 0.55 -0.4
4,440,447 - hsdS-2 SO4264 0.55 +0.0
4,440,452 - hsdS-2 SO4264 0.56 +0.1
4,440,459 + hsdS-2 SO4264 0.56 +0.2
4,440,581 + hsdS-2 SO4264 0.64 +0.8
4,440,581 + hsdS-2 SO4264 0.64 -0.2
4,440,589 - hsdS-2 SO4264 0.65 -0.3
4,440,591 + hsdS-2 SO4264 0.65 +0.6

Or see this region's nucleotide sequence