Strain Fitness in Shewanella oneidensis MR-1 around SO4107

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,264,093	+	mshA	SO4105	0.58	-0.3
4,264,170	+	mshA	SO4105	0.73	+0.2
4,264,171	+	mshA	SO4105	0.73	+0.0
4,264,171	+	mshA	SO4105	0.73	-0.1
4,264,171	+	mshA	SO4105	0.73	+0.0
4,264,171	+	mshA	SO4105	0.73	-0.1
4,264,171	+	mshA	SO4105	0.73	-0.7
4,264,178	-	mshA	SO4105	0.75	-0.3
4,264,179	-	mshA	SO4105	0.75	+1.3
4,264,180	+	mshA	SO4105	0.75	-0.1
4,264,180	+	mshA	SO4105	0.75	+0.6
4,264,212	-	mshA	SO4105	0.81	-0.2
4,264,247	-	mshA	SO4105	0.88	+0.2
4,264,272	-				-0.0
4,264,284	+				-0.4
4,264,285	+				-1.3
4,264,292	-				-0.2
4,264,293	-				+0.2
4,264,312	+				+0.0
4,264,315	-				-0.2
4,264,416	-				+0.3
4,264,421	+				-0.6
4,264,421	+				+0.2
4,264,421	+				-1.4
4,264,421	+				+0.7
4,264,421	+				+0.5
4,264,429	-				+0.0
4,264,429	-				-0.4
4,264,429	-				+0.4
4,264,429	-				+0.6
4,264,429	-				-0.4
4,264,451	-				-0.6
4,264,458	-	mshB	SO4106	0.10	-0.0
4,264,481	+	mshB	SO4106	0.14	-0.2
4,264,481	+	mshB	SO4106	0.14	+0.3
4,264,481	+	mshB	SO4106	0.14	+0.3
4,264,488	-	mshB	SO4106	0.15	+0.3
4,264,491	+	mshB	SO4106	0.16	-0.5
4,264,496	+	mshB	SO4106	0.17	-0.3
4,264,504	-	mshB	SO4106	0.18	-0.2
4,264,562	+	mshB	SO4106	0.27	+0.5
4,264,562	+	mshB	SO4106	0.27	+0.3
4,264,568	-	mshB	SO4106	0.28	-0.1
4,264,570	-	mshB	SO4106	0.28	-0.3
4,264,597	+	mshB	SO4106	0.33	+0.7
4,264,623	+	mshB	SO4106	0.37	-1.9
4,264,623	+	mshB	SO4106	0.37	-0.1
4,264,623	+	mshB	SO4106	0.37	+0.6
4,264,626	-	mshB	SO4106	0.38	-1.0
4,264,628	+	mshB	SO4106	0.38	+1.0
4,264,631	-	mshB	SO4106	0.38	-0.6
4,264,631	-	mshB	SO4106	0.38	-0.2
4,264,765	-	mshB	SO4106	0.60	+0.6
4,264,825	-	mshB	SO4106	0.70	-0.1
4,264,889	+	mshB	SO4106	0.80	+0.4
4,264,930	-	mshB	SO4106	0.87	-0.1
4,265,170	+		SO4107	0.17	+0.5
4,265,170	+		SO4107	0.17	-0.3
4,265,170	+		SO4107	0.17	+0.7
4,265,178	-		SO4107	0.18	+0.1
4,265,281	+		SO4107	0.39	+0.4
4,265,387	+		SO4107	0.60	-0.3
4,265,395	-		SO4107	0.62	+1.1
4,265,395	-		SO4107	0.62	+0.3
4,265,414	-		SO4107	0.66	+0.3
4,265,459	+		SO4107	0.75	+0.2
4,265,619	+				-0.2
4,265,627	-				-0.2
4,265,633	+				+0.3
4,265,636	-				+0.7
4,265,745	-	mshG	SO4108	0.11	+0.2
4,265,831	+	mshG	SO4108	0.18	-0.3
4,265,931	+	mshG	SO4108	0.26	-0.1
4,265,931	+	mshG	SO4108	0.26	+0.9
4,265,965	-	mshG	SO4108	0.29	+1.1
4,266,037	+	mshG	SO4108	0.35	-0.2
4,266,191	+	mshG	SO4108	0.48	+0.1
4,266,212	+	mshG	SO4108	0.49	+0.3
4,266,225	-	mshG	SO4108	0.50	+0.4
4,266,315	+	mshG	SO4108	0.58	-0.1
4,266,390	-	mshG	SO4108	0.64	+0.2
4,266,390	-	mshG	SO4108	0.64	-0.3
4,266,416	-	mshG	SO4108	0.66	-0.6
4,266,416	-	mshG	SO4108	0.66	+0.5
4,266,416	-	mshG	SO4108	0.66	-0.3
4,266,462	-	mshG	SO4108	0.70	-0.5
4,266,503	-	mshG	SO4108	0.73	+0.3