Strain Fitness in Shewanella oneidensis MR-1 around SO4052

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,204,089	-		SO4051	0.10	+0.3
4,204,095	-		SO4051	0.11	-0.4
4,204,122	+		SO4051	0.13	-0.2
4,204,139	+		SO4051	0.15	+0.8
4,204,139	+		SO4051	0.15	-0.3
4,204,139	+		SO4051	0.15	+0.9
4,204,142	-		SO4051	0.15	+0.3
4,204,147	-		SO4051	0.16	-0.1
4,204,147	-		SO4051	0.16	+0.3
4,204,147	-		SO4051	0.16	-0.2
4,204,147	-		SO4051	0.16	-0.5
4,204,149	-		SO4051	0.16	+0.4
4,204,222	-		SO4051	0.23	+1.0
4,204,227	-		SO4051	0.23	+0.4
4,204,234	-		SO4051	0.24	+0.2
4,204,240	+		SO4051	0.24	+0.2
4,204,324	-		SO4051	0.32	-0.0
4,204,389	-		SO4051	0.38	+0.1
4,204,402	-		SO4051	0.39	-0.0
4,204,519	-		SO4051	0.50	-1.0
4,204,519	-		SO4051	0.50	-0.1
4,204,554	-		SO4051	0.54	+0.3
4,204,836	-		SO4051	0.80	+0.1
4,204,874	+		SO4051	0.83	-0.0
4,204,881	+		SO4051	0.84	-0.2
4,204,882	-		SO4051	0.84	-0.6
4,204,915	-		SO4051	0.87	+0.4
4,204,933	+		SO4051	0.89	+0.9
4,204,933	+		SO4051	0.89	+0.1
4,204,941	-		SO4051	0.90	-0.4
4,204,941	-		SO4051	0.90	+1.4
4,205,071	+				-0.1
4,205,289	-		SO4052	0.48	-0.5
4,205,313	-		SO4052	0.53	-0.2
4,205,313	-		SO4052	0.53	+0.8
4,205,313	-		SO4052	0.53	+0.5
4,205,313	-		SO4052	0.53	+0.9
4,205,313	-		SO4052	0.53	+0.6
4,205,313	-		SO4052	0.53	+0.1
4,205,325	-		SO4052	0.56	-0.0
4,205,506	-				+0.3
4,205,631	-				+0.3
4,205,745	+				-0.3
4,205,783	+				+0.2
4,205,783	+				+0.4
4,205,796	+				+0.1
4,205,796	+				+0.2
4,205,868	+				+0.2
4,205,876	-				+0.2
4,205,978	-		SO4053	0.12	-0.1
4,205,980	-		SO4053	0.12	+0.2
4,206,215	+		SO4053	0.24	-0.0
4,206,221	-		SO4053	0.25	-0.7
4,206,223	-		SO4053	0.25	+0.5
4,206,273	-		SO4053	0.27	+0.0
4,206,282	+		SO4053	0.28	+0.2
4,206,312	-		SO4053	0.29	+0.8
4,206,342	+		SO4053	0.31	-0.6
4,206,452	-		SO4053	0.37	-0.6
4,206,484	-		SO4053	0.38	+1.5