Strain Fitness in Shewanella oneidensis MR-1 around SO3964

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,103,365	+	rpoN	SO3961	0.86	-0.9
4,103,365	+	rpoN	SO3961	0.86	-1.4
4,103,373	-	rpoN	SO3961	0.86	+0.5
4,103,373	-	rpoN	SO3961	0.86	-1.4
4,103,383	-	rpoN	SO3961	0.87	-1.0
4,103,389	+	rpoN	SO3961	0.87	-0.5
4,103,389	+	rpoN	SO3961	0.87	-1.2
4,103,397	-	rpoN	SO3961	0.88	+0.1
4,103,487	-				-0.6
4,103,535	-				-0.2
4,103,561	-				-0.2
4,103,563	+				-0.2
4,103,563	+				+0.3
4,103,642	-	yfiA-3	SO3962	0.12	-0.5
4,103,657	+	yfiA-3	SO3962	0.17	+0.0
4,103,705	+	yfiA-3	SO3962	0.34	-0.4
4,103,823	+	yfiA-3	SO3962	0.75	-1.4
4,103,895	+				+0.2
4,103,942	+	ptsN	SO3963	0.10	-2.0
4,103,942	+	ptsN	SO3963	0.10	-1.1
4,103,950	-	ptsN	SO3963	0.12	-2.2
4,103,993	+	ptsN	SO3963	0.22	-0.8
4,104,001	-	ptsN	SO3963	0.23	-0.8
4,104,065	+	ptsN	SO3963	0.38	-1.8
4,104,065	+	ptsN	SO3963	0.38	+0.3
4,104,108	+	ptsN	SO3963	0.48	-2.5
4,104,278	+	ptsN	SO3963	0.86	+0.2
4,104,386	+				-0.2
4,104,394	-				-0.1
4,104,394	-				+0.3
4,104,465	+		SO3964	0.15	-1.3
4,104,473	-		SO3964	0.16	+1.3
4,104,473	-		SO3964	0.16	-0.1
4,104,574	-		SO3964	0.28	+0.6
4,104,942	-		SO3964	0.71	+0.2
4,105,286	-	ptsO	SO3965	0.39	+0.8
4,105,421	+	ptsO	SO3965	0.88	-0.5
4,105,443	-				+0.1
4,105,654	-				+0.1
4,105,680	-				-0.8
4,105,906	+	mgtE-2	SO3966	0.19	+1.1
4,105,914	-	mgtE-2	SO3966	0.19	+0.5
4,106,006	+	mgtE-2	SO3966	0.26	+0.1
4,106,048	+	mgtE-2	SO3966	0.29	-0.1
4,106,056	-	mgtE-2	SO3966	0.30	+0.2
4,106,082	-	mgtE-2	SO3966	0.32	-0.0
4,106,165	-	mgtE-2	SO3966	0.38	+0.5