Strain Fitness in Shewanella oneidensis MR-1 around SO3152

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3150 and SO3151 are separated by 100 nucleotidesSO3151 and SO3152 are separated by 0 nucleotidesSO3152 and proS are separated by 255 nucleotides SO3150: SO3150 - lipoprotein, putative (NCBI ptt file), at 3,287,769 to 3,288,149 SO3150 SO3151: SO3151 - conserved hypothetical protein (NCBI ptt file), at 3,288,250 to 3,288,984 SO3151 SO3152: SO3152 - acetyltransferase, CysE/LacA/LpxA/NodL family (NCBI ptt file), at 3,288,985 to 3,289,614 SO3152 SO3154: proS - prolyl-tRNA synthetase (NCBI ptt file), at 3,289,870 to 3,291,582 proS Position (kb) 3288 3289 3290Strain fitness (log2 ratio) -1 0 1at 3288.084 kb on + strand, within SO3150at 3288.092 kb on - strand, within SO3150at 3288.356 kb on - strand, within SO3151at 3288.389 kb on - strand, within SO3151at 3288.465 kb on - strand, within SO3151at 3288.736 kb on + strand, within SO3151at 3288.789 kb on - strand, within SO3151at 3288.807 kb on + strand, within SO3151at 3289.084 kb on + strand, within SO3152at 3289.102 kb on - strand, within SO3152at 3289.103 kb on - strand, within SO3152at 3289.121 kb on + strand, within SO3152at 3289.136 kb on - strand, within SO3152at 3289.232 kb on + strand, within SO3152at 3289.238 kb on - strand, within SO3152at 3289.530 kb on - strand, within SO3152at 3289.535 kb on - strand, within SO3152at 3289.562 kb on - strandat 3289.654 kb on + strandat 3289.662 kb on - strandat 3289.672 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,288,084 + SO3150 0.83 -0.0
3,288,092 - SO3150 0.85 +0.4
3,288,356 - SO3151 0.14 +0.1
3,288,389 - SO3151 0.19 -0.2
3,288,465 - SO3151 0.29 -0.8
3,288,736 + SO3151 0.66 +0.3
3,288,789 - SO3151 0.73 +0.1
3,288,807 + SO3151 0.76 +0.1
3,289,084 + SO3152 0.16 +0.4
3,289,102 - SO3152 0.19 +0.6
3,289,103 - SO3152 0.19 +0.3
3,289,121 + SO3152 0.22 -0.3
3,289,136 - SO3152 0.24 +0.3
3,289,232 + SO3152 0.39 +0.5
3,289,238 - SO3152 0.40 +0.7
3,289,530 - SO3152 0.87 +0.2
3,289,535 - SO3152 0.87 +0.1
3,289,562 - -0.3
3,289,654 + +0.6
3,289,662 - +0.1
3,289,672 - +0.0

Or see this region's nucleotide sequence