Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3150 and SO3151 are separated by 100 nucleotides SO3151 and SO3152 are separated by 0 nucleotides SO3152 and proS are separated by 255 nucleotides
SO3150: SO3150 - lipoprotein, putative (NCBI ptt file), at 3,287,769 to 3,288,149
SO3150
SO3151: SO3151 - conserved hypothetical protein (NCBI ptt file), at 3,288,250 to 3,288,984
SO3151
SO3152: SO3152 - acetyltransferase, CysE/LacA/LpxA/NodL family (NCBI ptt file), at 3,288,985 to 3,289,614
SO3152
SO3154: proS - prolyl-tRNA synthetase (NCBI ptt file), at 3,289,870 to 3,291,582
proS
Position (kb)
3288
3289
3290 Strain fitness (log2 ratio)
-1
0
1 at 3288.084 kb on + strand, within SO3150 at 3288.092 kb on - strand, within SO3150 at 3288.356 kb on - strand, within SO3151 at 3288.389 kb on - strand, within SO3151 at 3288.465 kb on - strand, within SO3151 at 3288.736 kb on + strand, within SO3151 at 3288.789 kb on - strand, within SO3151 at 3288.807 kb on + strand, within SO3151 at 3289.084 kb on + strand, within SO3152 at 3289.102 kb on - strand, within SO3152 at 3289.103 kb on - strand, within SO3152 at 3289.121 kb on + strand, within SO3152 at 3289.136 kb on - strand, within SO3152 at 3289.232 kb on + strand, within SO3152 at 3289.238 kb on - strand, within SO3152 at 3289.530 kb on - strand, within SO3152 at 3289.535 kb on - strand, within SO3152 at 3289.562 kb on - strand at 3289.654 kb on + strand at 3289.662 kb on - strand at 3289.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,288,084 + SO3150 0.83 -0.0 3,288,092 - SO3150 0.85 +0.4 3,288,356 - SO3151 0.14 +0.1 3,288,389 - SO3151 0.19 -0.2 3,288,465 - SO3151 0.29 -0.8 3,288,736 + SO3151 0.66 +0.3 3,288,789 - SO3151 0.73 +0.1 3,288,807 + SO3151 0.76 +0.1 3,289,084 + SO3152 0.16 +0.4 3,289,102 - SO3152 0.19 +0.6 3,289,103 - SO3152 0.19 +0.3 3,289,121 + SO3152 0.22 -0.3 3,289,136 - SO3152 0.24 +0.3 3,289,232 + SO3152 0.39 +0.5 3,289,238 - SO3152 0.40 +0.7 3,289,530 - SO3152 0.87 +0.2 3,289,535 - SO3152 0.87 +0.1 3,289,562 - -0.3 3,289,654 + +0.6 3,289,662 - +0.1 3,289,672 - +0.0
Or see this region's nucleotide sequence