Strain Fitness in Shewanella oneidensis MR-1 around SO3101

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,226,121	+		SO3099	0.78	+0.9
3,226,176	-		SO3099	0.82	+0.3
3,226,388	+				-0.7
3,226,388	+				+0.0
3,226,388	+				+0.7
3,226,388	+				-0.1
3,226,388	+				+0.2
3,226,388	+				+0.4
3,226,391	-				-0.1
3,226,396	-				+1.3
3,226,396	-				+0.5
3,226,396	-				+0.3
3,226,396	-				+0.2
3,226,398	+				-0.4
3,226,399	-				+0.0
3,226,401	-				+0.2
3,226,410	+				+0.3
3,226,538	-		SO3100	0.17	-0.9
3,226,576	-		SO3100	0.26	+1.2
3,226,588	+		SO3100	0.29	-0.0
3,226,682	+		SO3100	0.50	+0.4
3,226,747	+		SO3100	0.64	+0.6
3,226,752	+		SO3100	0.65	+0.5
3,226,760	-		SO3100	0.67	-0.5
3,226,781	-		SO3100	0.72	-0.3
3,226,783	+		SO3100	0.72	-0.1
3,226,791	-		SO3100	0.74	-0.0
3,226,791	-		SO3100	0.74	+0.3
3,226,918	-				-0.8
3,226,973	+				+0.1
3,226,974	-				+0.9
3,227,001	+				+0.3
3,227,002	-				+0.8
3,227,009	-				+0.4
3,227,009	-				+0.2
3,227,009	-				+0.0
3,227,060	+				-0.2
3,227,129	+				+0.1
3,227,129	+				-0.4
3,227,132	-				-0.8
3,227,191	-		SO3101	0.18	+0.3
3,227,394	+		SO3101	0.46	+0.5
3,227,402	-		SO3101	0.47	+0.8
3,227,449	+		SO3101	0.54	+0.1
3,227,449	+		SO3101	0.54	+0.4
3,227,449	+		SO3101	0.54	-0.5
3,227,457	-		SO3101	0.55	+1.0
3,227,457	-		SO3101	0.55	+0.2
3,227,457	-		SO3101	0.55	+0.5
3,227,530	+		SO3101	0.65	-0.1
3,227,712	+				+0.5
3,227,993	+				+0.4
3,227,993	+				+0.2
3,228,054	-				+0.5
3,228,062	-				+0.7
3,228,129	+		SO3102	0.16	-0.3
3,228,136	+		SO3102	0.16	+0.5
3,228,136	+		SO3102	0.16	+0.2
3,228,166	-		SO3102	0.19	-0.3
3,228,551	-		SO3102	0.57	+0.3
3,228,691	+		SO3102	0.71	+0.1
3,228,757	-		SO3102	0.78	-0.5