Strain Fitness in Shewanella oneidensis MR-1 around SO2998

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,116,803	+				-0.5
3,116,912	+				-0.6
3,116,912	+				-0.0
3,116,912	+				-0.9
3,116,920	-				-1.7
3,116,964	+				-1.0
3,116,964	+				-0.3
3,116,964	+				+0.0
3,116,964	+				-0.7
3,116,964	+				+0.1
3,116,964	+				+0.2
3,116,964	+				-0.2
3,116,964	+				-0.0
3,116,964	+				-0.7
3,116,964	+				+0.1
3,116,964	+				-1.0
3,116,964	+				+0.6
3,116,964	+				-1.3
3,116,964	+				+0.5
3,116,972	-				-0.1
3,116,972	-				-0.1
3,116,972	-				-0.4
3,116,972	-				+0.0
3,116,972	-				-0.5
3,116,972	-				-0.3
3,116,972	-				-0.0
3,116,972	-				+0.3
3,116,972	-				+0.4
3,116,972	-				-0.6
3,116,972	-				+2.1
3,116,972	-				-0.6
3,117,013	+				-1.1
3,117,048	-		SO2995	0.18	+0.6
3,117,067	-		SO2995	0.26	+0.1
3,117,162	-		SO2995	0.66	+0.1
3,117,276	-				-0.3
3,117,277	-				+0.4
3,117,277	-				+0.2
3,117,279	+				-0.7
3,117,282	-				-0.2
3,117,299	+				-0.8
3,117,320	+				-0.1
3,117,320	+				-0.5
3,117,320	+				-0.2
3,117,328	-				+0.6
3,117,378	-				-0.7
3,117,425	-				-0.1
3,117,465	+		SO2997	0.18	-0.5
3,117,470	+		SO2997	0.20	-0.9
3,117,483	+		SO2997	0.24	+0.4
3,117,504	+		SO2997	0.31	-0.6
3,117,514	+		SO2997	0.34	+0.0
3,117,672	+		SO2997	0.86	-1.4
3,117,697	+				+1.5
3,117,794	-		SO2998	0.30	+0.9
3,117,864	-		SO2998	0.55	+0.1
3,118,082	-				-1.0
3,118,091	+		SO2999	0.11	-0.4
3,118,091	+		SO2999	0.11	+0.5
3,118,099	-		SO2999	0.16	-0.2
3,118,241	+				-0.5
3,118,440	-		SO3000	0.33	-0.5
3,118,455	+		SO3000	0.35	-1.9
3,118,576	-		SO3000	0.56	-0.0
3,118,667	-		SO3000	0.71	+0.5
3,118,738	+		SO3000	0.84	+0.3
3,118,738	+		SO3000	0.84	-0.5
3,118,738	+		SO3000	0.84	-0.3
3,118,738	+		SO3000	0.84	+0.1
3,118,739	+		SO3000	0.84	-0.5
3,118,746	-		SO3000	0.85	-0.3
3,118,747	-		SO3000	0.85	+0.3
3,118,773	-		SO3000	0.89	-1.1
3,118,792	+				+0.5
3,118,810	+				-2.2
3,118,880	-		SO3001	0.13	+0.3
3,118,963	+		SO3001	0.34	-0.3
3,118,971	-		SO3001	0.36	-0.1
3,118,975	+		SO3001	0.37	-0.0
3,118,983	+		SO3001	0.39	-0.2