Strain Fitness in Shewanella oneidensis MR-1 around SO2311

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,423,542	-				+0.4
2,423,542	-				+0.5
2,423,547	-				-0.0
2,423,559	-				-0.3
2,423,579	+		SO2311	0.24	+0.6
2,423,632	+		SO2311	0.67	+0.4
2,423,635	-		SO2311	0.70	+0.5
2,423,640	-		SO2311	0.74	-0.1
2,423,640	-		SO2311	0.74	+0.7
2,423,649	-		SO2311	0.81	-0.4
2,423,786	-				+0.6
2,423,803	-				+0.2
2,423,808	-		SO2312	0.11	+0.4
2,423,854	+		SO2312	0.19	-1.8
2,423,854	+		SO2312	0.19	+0.4
2,423,907	-		SO2312	0.28	-0.0
2,423,907	-		SO2312	0.28	+0.7
2,423,969	+		SO2312	0.40	+0.3
2,423,972	-		SO2312	0.40	-0.8
2,423,977	-		SO2312	0.41	-1.5
2,424,032	+		SO2312	0.51	+0.8
2,424,039	-		SO2312	0.52	-1.9
2,424,040	-		SO2312	0.53	-0.1
2,424,062	-		SO2312	0.57	+0.5
2,424,086	-		SO2312	0.61	+0.4
2,424,103	+		SO2312	0.64	-0.4
2,424,219	-		SO2312	0.85	+0.7
2,424,250	+				-0.1
2,424,253	-				+0.1
2,424,257	+				+0.6
2,424,265	-				+0.4
2,424,387	-				-0.2
2,424,547	-				+0.5
2,424,596	+				+0.7
2,424,612	-				+0.8
2,424,637	+				+0.2
2,424,637	+				-1.0
2,424,669	+				-1.3