Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2180 and SO2181 are separated by 53 nucleotides SO2181 and SO2182 are separated by 176 nucleotides SO2182 and SO2183 are separated by 58 nucleotides
SO2180: SO2180 - peptidase, M23/M37 family (NCBI ptt file), at 2,291,918 to 2,292,853
SO2180
SO2181: SO2181 - hypothetical protein (NCBI ptt file), at 2,292,907 to 2,293,191
SO2181
SO2182: SO2182 - conserved hypothetical protein (NCBI ptt file), at 2,293,368 to 2,293,970
SO2182
SO2183: SO2183 - conserved hypothetical protein (NCBI ptt file), at 2,294,029 to 2,294,544
SO2183
Position (kb)
2292
2293
2294 Strain fitness (log2 ratio)
-1
0
1
2 at 2291.928 kb on - strand at 2291.941 kb on + strand at 2292.041 kb on + strand, within SO2180 at 2292.043 kb on + strand, within SO2180 at 2292.043 kb on - strand, within SO2180 at 2292.098 kb on + strand, within SO2180 at 2292.106 kb on - strand, within SO2180 at 2292.252 kb on + strand, within SO2180 at 2292.260 kb on + strand, within SO2180 at 2292.373 kb on + strand, within SO2180 at 2292.466 kb on - strand, within SO2180 at 2292.466 kb on - strand, within SO2180 at 2292.466 kb on - strand, within SO2180 at 2292.468 kb on - strand, within SO2180 at 2292.743 kb on + strand, within SO2180 at 2292.743 kb on + strand, within SO2180 at 2292.782 kb on + strand at 2292.868 kb on + strand at 2293.089 kb on - strand, within SO2181 at 2293.708 kb on + strand, within SO2182 at 2293.708 kb on + strand, within SO2182 at 2293.873 kb on - strand, within SO2182 at 2293.909 kb on + strand, within SO2182 at 2293.943 kb on - strand at 2293.987 kb on + strand at 2294.027 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,291,928 - +0.4 2,291,941 + +0.4 2,292,041 + SO2180 0.13 +0.4 2,292,043 + SO2180 0.13 +0.1 2,292,043 - SO2180 0.13 +1.8 2,292,098 + SO2180 0.19 +0.2 2,292,106 - SO2180 0.20 +0.1 2,292,252 + SO2180 0.36 -0.1 2,292,260 + SO2180 0.37 +0.7 2,292,373 + SO2180 0.49 -0.3 2,292,466 - SO2180 0.59 +0.1 2,292,466 - SO2180 0.59 +0.3 2,292,466 - SO2180 0.59 +1.0 2,292,468 - SO2180 0.59 +0.6 2,292,743 + SO2180 0.88 +0.4 2,292,743 + SO2180 0.88 +0.9 2,292,782 + +0.1 2,292,868 + +0.4 2,293,089 - SO2181 0.64 +0.8 2,293,708 + SO2182 0.56 +0.2 2,293,708 + SO2182 0.56 -0.7 2,293,873 - SO2182 0.84 +0.0 2,293,909 + SO2182 0.90 -0.2 2,293,943 - -0.5 2,293,987 + +0.0 2,294,027 + +0.1
Or see this region's nucleotide sequence