Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nhaD and SO0936 are separated by 165 nucleotides SO0936 and SO0937 are separated by 1 nucleotides SO0937 and SO0938 are separated by 66 nucleotides
SO0935: nhaD - Na+/H+ antiporter (NCBI ptt file), at 966,474 to 967,904
nhaD
SO0936: SO0936 - transcriptional regulator (NCBI ptt file), at 968,070 to 968,816
SO0936
SO0937: SO0937 - hypothetical protein (NCBI ptt file), at 968,818 to 969,357
SO0937
SO0938: SO0938 - hypothetical protein (NCBI ptt file), at 969,424 to 969,951
SO0938
Position (kb) 968
969 Strain fitness (log2 ratio) -2
-1
0
1 at 967.120 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.130 kb on + strand, within nhaD at 967.233 kb on - strand, within nhaD at 967.276 kb on + strand, within nhaD at 967.328 kb on + strand, within nhaD at 967.370 kb on + strand, within nhaD at 967.378 kb on - strand, within nhaD at 967.411 kb on + strand, within nhaD at 967.458 kb on + strand, within nhaD at 967.464 kb on - strand, within nhaD at 967.586 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.608 kb on + strand, within nhaD at 967.612 kb on + strand, within nhaD at 967.616 kb on - strand, within nhaD at 967.637 kb on - strand, within nhaD at 967.695 kb on - strand, within nhaD at 967.698 kb on + strand, within nhaD at 967.850 kb on + strand at 967.858 kb on - strand at 967.989 kb on + strand at 968.011 kb on + strand at 968.040 kb on + strand at 968.239 kb on - strand, within SO0936 at 968.257 kb on - strand, within SO0936 at 968.324 kb on + strand, within SO0936 at 968.398 kb on + strand, within SO0936 at 968.532 kb on + strand, within SO0936 at 968.573 kb on + strand, within SO0936 at 968.576 kb on - strand, within SO0936 at 968.674 kb on - strand, within SO0936 at 968.847 kb on + strand at 969.079 kb on - strand, within SO0937 at 969.079 kb on - strand, within SO0937 at 969.129 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.307 kb on - strand at 969.361 kb on + strand at 969.369 kb on - strand at 969.424 kb on + strand at 969.430 kb on - strand at 969.449 kb on - strand at 969.481 kb on - strand, within SO0938 at 969.521 kb on + strand, within SO0938 at 969.529 kb on - strand, within SO0938 at 969.578 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.595 kb on + strand, within SO0938 at 969.602 kb on + strand, within SO0938 at 969.603 kb on - strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.797 kb on + strand, within SO0938
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 967,120 + nhaD SO0935 0.45 +0.3 967,130 + nhaD SO0935 0.46 +0.5 967,130 + nhaD SO0935 0.46 +0.7 967,233 - nhaD SO0935 0.53 -1.2 967,276 + nhaD SO0935 0.56 +0.7 967,328 + nhaD SO0935 0.60 -1.4 967,370 + nhaD SO0935 0.63 -1.1 967,378 - nhaD SO0935 0.63 +0.0 967,411 + nhaD SO0935 0.65 +0.1 967,458 + nhaD SO0935 0.69 -1.4 967,464 - nhaD SO0935 0.69 -0.1 967,586 + nhaD SO0935 0.78 -0.5 967,608 + nhaD SO0935 0.79 -0.0 967,608 + nhaD SO0935 0.79 -0.8 967,612 + nhaD SO0935 0.80 +0.1 967,616 - nhaD SO0935 0.80 +0.1 967,637 - nhaD SO0935 0.81 -0.8 967,695 - nhaD SO0935 0.85 -0.2 967,698 + nhaD SO0935 0.86 +0.1 967,850 + -0.2 967,858 - +0.6 967,989 + +0.1 968,011 + -0.9 968,040 + -0.3 968,239 - SO0936 0.23 +0.4 968,257 - SO0936 0.25 -0.8 968,324 + SO0936 0.34 +1.1 968,398 + SO0936 0.44 +0.3 968,532 + SO0936 0.62 +0.7 968,573 + SO0936 0.67 +0.5 968,576 - SO0936 0.68 +0.0 968,674 - SO0936 0.81 +0.6 968,847 + +0.3 969,079 - SO0937 0.48 -0.5 969,079 - SO0937 0.48 -1.7 969,129 + SO0937 0.58 -0.8 969,299 + SO0937 0.89 -0.2 969,299 + SO0937 0.89 +0.7 969,307 - -0.1 969,361 + -0.0 969,369 - -0.1 969,424 + -1.9 969,430 - -0.8 969,449 - -0.4 969,481 - SO0938 0.11 -0.2 969,521 + SO0938 0.18 -0.5 969,529 - SO0938 0.20 -0.2 969,578 + SO0938 0.29 +0.3 969,585 + SO0938 0.30 -0.3 969,585 + SO0938 0.30 -0.1 969,595 + SO0938 0.32 +0.3 969,602 + SO0938 0.34 +0.3 969,603 - SO0938 0.34 +0.1 969,643 + SO0938 0.41 -0.3 969,643 + SO0938 0.41 +0.7 969,797 + SO0938 0.71 +0.3
Or see this region's nucleotide sequence