Strain Fitness in Shewanella oneidensis MR-1 around SO0907

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnqrD-1 and nqrE-1 are separated by 9 nucleotidesnqrE-1 and nqrF-1 are separated by 51 nucleotidesnqrF-1 and SO0908 are separated by 97 nucleotidesSO0908 and SO0909 are separated by 42 nucleotides SO0905: nqrD-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file), at 932,313 to 932,933 nqrD-1 SO0906: nqrE-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file), at 932,943 to 933,551 nqrE-1 SO0907: nqrF-1 - NADH:ubiquinone oxidoreductase, Na translocating, beta subunit (NCBI ptt file), at 933,603 to 934,820 nqrF-1 SO0908: SO0908 - conserved domain protein (NCBI ptt file), at 934,918 to 935,235 SO0908 SO0909: SO0909 - hypothetical protein (NCBI ptt file), at 935,278 to 935,841 SO0909 Position (kb) 933 934 935Strain fitness (log2 ratio) -2 -1 0 1 2at 932.652 kb on + strand, within nqrD-1at 932.660 kb on - strand, within nqrD-1at 932.664 kb on + strand, within nqrD-1at 932.684 kb on + strand, within nqrD-1at 932.700 kb on + strand, within nqrD-1at 932.708 kb on - strand, within nqrD-1at 932.737 kb on + strand, within nqrD-1at 932.737 kb on + strand, within nqrD-1at 932.745 kb on - strand, within nqrD-1at 932.745 kb on - strand, within nqrD-1at 932.790 kb on - strand, within nqrD-1at 932.805 kb on - strand, within nqrD-1at 932.805 kb on - strand, within nqrD-1at 932.927 kb on + strandat 932.961 kb on - strandat 932.961 kb on - strandat 932.970 kb on - strandat 932.979 kb on + strandat 932.980 kb on - strandat 932.997 kb on - strandat 932.999 kb on + strandat 933.015 kb on + strand, within nqrE-1at 933.023 kb on - strand, within nqrE-1at 933.025 kb on + strand, within nqrE-1at 933.035 kb on + strand, within nqrE-1at 933.138 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.259 kb on + strand, within nqrE-1at 933.311 kb on - strand, within nqrE-1at 933.407 kb on - strand, within nqrE-1at 933.407 kb on - strand, within nqrE-1at 933.407 kb on - strand, within nqrE-1at 933.425 kb on + strand, within nqrE-1at 933.430 kb on - strand, within nqrE-1at 933.468 kb on + strand, within nqrE-1at 933.469 kb on + strand, within nqrE-1at 933.469 kb on + strand, within nqrE-1at 933.477 kb on - strand, within nqrE-1at 933.486 kb on - strand, within nqrE-1at 933.513 kb on + strandat 933.557 kb on + strandat 933.634 kb on + strandat 933.647 kb on - strandat 933.701 kb on + strandat 933.828 kb on + strand, within nqrF-1at 934.195 kb on + strand, within nqrF-1at 934.339 kb on + strand, within nqrF-1at 934.364 kb on + strand, within nqrF-1at 934.486 kb on - strand, within nqrF-1at 934.600 kb on + strand, within nqrF-1at 934.624 kb on - strand, within nqrF-1at 934.631 kb on + strand, within nqrF-1at 934.641 kb on + strand, within nqrF-1at 934.650 kb on + strand, within nqrF-1at 934.724 kb on + strandat 934.731 kb on + strandat 934.862 kb on - strandat 934.990 kb on - strand, within SO0908at 935.028 kb on + strand, within SO0908at 935.028 kb on + strand, within SO0908at 935.036 kb on - strand, within SO0908at 935.036 kb on - strand, within SO0908at 935.036 kb on - strand, within SO0908at 935.036 kb on - strand, within SO0908at 935.192 kb on + strand, within SO0908at 935.197 kb on + strand, within SO0908at 935.226 kb on - strandat 935.226 kb on - strandat 935.226 kb on - strandat 935.249 kb on - strandat 935.274 kb on - strandat 935.334 kb on + strandat 935.381 kb on + strand, within SO0909at 935.390 kb on + strand, within SO0909at 935.390 kb on + strand, within SO0909at 935.397 kb on + strand, within SO0909at 935.400 kb on + strand, within SO0909at 935.415 kb on + strand, within SO0909at 935.523 kb on + strand, within SO0909at 935.523 kb on + strand, within SO0909at 935.523 kb on + strand, within SO0909at 935.523 kb on + strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.531 kb on - strand, within SO0909at 935.555 kb on + strand, within SO0909at 935.577 kb on + strand, within SO0909at 935.595 kb on - strand, within SO0909at 935.664 kb on - strand, within SO0909at 935.736 kb on - strand, within SO0909at 935.774 kb on + strand, within SO0909at 935.793 kb on + strandat 935.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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932,652 + nqrD-1 SO0905 0.55 -0.7
932,660 - nqrD-1 SO0905 0.56 +0.1
932,664 + nqrD-1 SO0905 0.57 -0.1
932,684 + nqrD-1 SO0905 0.60 +0.0
932,700 + nqrD-1 SO0905 0.62 -0.1
932,708 - nqrD-1 SO0905 0.64 +0.2
932,737 + nqrD-1 SO0905 0.68 +0.7
932,737 + nqrD-1 SO0905 0.68 +0.0
932,745 - nqrD-1 SO0905 0.70 +1.0
932,745 - nqrD-1 SO0905 0.70 +0.4
932,790 - nqrD-1 SO0905 0.77 -0.1
932,805 - nqrD-1 SO0905 0.79 +0.3
932,805 - nqrD-1 SO0905 0.79 +0.1
932,927 + +0.4
932,961 - -1.5
932,961 - -0.5
932,970 - -0.3
932,979 + -1.1
932,980 - +0.1
932,997 - +0.5
932,999 + -1.3
933,015 + nqrE-1 SO0906 0.12 -0.0
933,023 - nqrE-1 SO0906 0.13 +0.0
933,025 + nqrE-1 SO0906 0.13 +0.8
933,035 + nqrE-1 SO0906 0.15 -0.8
933,138 - nqrE-1 SO0906 0.32 +0.1
933,157 - nqrE-1 SO0906 0.35 +0.1
933,157 - nqrE-1 SO0906 0.35 +0.2
933,157 - nqrE-1 SO0906 0.35 +0.3
933,259 + nqrE-1 SO0906 0.52 +0.2
933,311 - nqrE-1 SO0906 0.60 +0.2
933,407 - nqrE-1 SO0906 0.76 -0.9
933,407 - nqrE-1 SO0906 0.76 -0.3
933,407 - nqrE-1 SO0906 0.76 +0.1
933,425 + nqrE-1 SO0906 0.79 +0.7
933,430 - nqrE-1 SO0906 0.80 -0.2
933,468 + nqrE-1 SO0906 0.86 +0.6
933,469 + nqrE-1 SO0906 0.86 -0.9
933,469 + nqrE-1 SO0906 0.86 +0.2
933,477 - nqrE-1 SO0906 0.88 +0.3
933,486 - nqrE-1 SO0906 0.89 +0.4
933,513 + +0.4
933,557 + -0.0
933,634 + +0.8
933,647 - +0.4
933,701 + +0.3
933,828 + nqrF-1 SO0907 0.18 +0.1
934,195 + nqrF-1 SO0907 0.49 +1.5
934,339 + nqrF-1 SO0907 0.60 +0.7
934,364 + nqrF-1 SO0907 0.62 -1.4
934,486 - nqrF-1 SO0907 0.72 +0.4
934,600 + nqrF-1 SO0907 0.82 -0.8
934,624 - nqrF-1 SO0907 0.84 +0.1
934,631 + nqrF-1 SO0907 0.84 +0.6
934,641 + nqrF-1 SO0907 0.85 +1.2
934,650 + nqrF-1 SO0907 0.86 +0.2
934,724 + -0.8
934,731 + -0.2
934,862 - +0.9
934,990 - SO0908 0.23 -0.6
935,028 + SO0908 0.35 -0.5
935,028 + SO0908 0.35 +0.4
935,036 - SO0908 0.37 -1.0
935,036 - SO0908 0.37 +0.2
935,036 - SO0908 0.37 +0.9
935,036 - SO0908 0.37 -0.0
935,192 + SO0908 0.86 +0.4
935,197 + SO0908 0.88 +0.3
935,226 - +0.1
935,226 - +0.5
935,226 - -0.2
935,249 - -0.9
935,274 - -2.4
935,334 + -0.5
935,381 + SO0909 0.18 +0.3
935,390 + SO0909 0.20 +0.4
935,390 + SO0909 0.20 +0.0
935,397 + SO0909 0.21 +0.0
935,400 + SO0909 0.22 -1.4
935,415 + SO0909 0.24 +0.3
935,523 + SO0909 0.43 +0.3
935,523 + SO0909 0.43 -0.4
935,523 + SO0909 0.43 +0.4
935,523 + SO0909 0.43 +0.1
935,531 - SO0909 0.45 +0.9
935,531 - SO0909 0.45 -0.1
935,531 - SO0909 0.45 -0.5
935,531 - SO0909 0.45 -0.1
935,531 - SO0909 0.45 +0.2
935,531 - SO0909 0.45 -0.3
935,531 - SO0909 0.45 +0.2
935,531 - SO0909 0.45 -0.1
935,531 - SO0909 0.45 +2.4
935,531 - SO0909 0.45 -0.2
935,531 - SO0909 0.45 +0.2
935,531 - SO0909 0.45 +0.0
935,555 + SO0909 0.49 -0.7
935,577 + SO0909 0.53 -0.4
935,595 - SO0909 0.56 -0.1
935,664 - SO0909 0.68 -0.6
935,736 - SO0909 0.81 -0.8
935,774 + SO0909 0.88 +0.4
935,793 + +0.2
935,801 - -0.8

Or see this region's nucleotide sequence