Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napD overlap by 4 nucleotides napD and SO0850 are separated by 509 nucleotides
SO0848: napA - periplasmic nitrate reductase (NCBI ptt file), at 869,029 to 871,509
napA
SO0849: napD - napD protein (NCBI ptt file), at 871,506 to 871,790
napD
SO0850: SO0850 - hypothetical protein (NCBI ptt file), at 872,300 to 873,928
SO0850
Position (kb) 871
872 Strain fitness (log2 ratio) -1
0
1
2 at 870.526 kb on - strand, within napA at 870.665 kb on + strand, within napA at 870.687 kb on - strand, within napA at 870.687 kb on - strand, within napA at 870.814 kb on + strand, within napA at 870.883 kb on - strand, within napA at 870.938 kb on - strand, within napA at 870.961 kb on - strand, within napA at 870.971 kb on + strand, within napA at 871.047 kb on - strand, within napA at 871.065 kb on + strand, within napA at 871.073 kb on - strand, within napA at 871.090 kb on + strand, within napA at 871.263 kb on + strand at 871.263 kb on + strand at 871.280 kb on - strand at 871.295 kb on - strand at 871.332 kb on + strand at 871.359 kb on - strand at 871.381 kb on - strand at 871.409 kb on - strand at 871.519 kb on - strand at 871.519 kb on - strand at 871.662 kb on - strand, within napD at 871.728 kb on - strand, within napD at 871.738 kb on - strand, within napD at 871.745 kb on - strand, within napD at 871.867 kb on + strand at 871.875 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.348 kb on + strand at 872.348 kb on + strand at 872.356 kb on - strand at 872.356 kb on - strand at 872.431 kb on - strand at 872.454 kb on + strand at 872.518 kb on + strand, within SO0850 at 872.634 kb on - strand, within SO0850 at 872.669 kb on - strand, within SO0850 at 872.673 kb on + strand, within SO0850 at 872.674 kb on + strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.725 kb on - strand, within SO0850 at 872.767 kb on + strand, within SO0850
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 870,526 - napA SO0848 0.60 +0.7 870,665 + napA SO0848 0.66 -0.3 870,687 - napA SO0848 0.67 +2.0 870,687 - napA SO0848 0.67 +0.0 870,814 + napA SO0848 0.72 +0.1 870,883 - napA SO0848 0.75 +0.5 870,938 - napA SO0848 0.77 +0.1 870,961 - napA SO0848 0.78 -0.1 870,971 + napA SO0848 0.78 +0.4 871,047 - napA SO0848 0.81 +0.5 871,065 + napA SO0848 0.82 -0.3 871,073 - napA SO0848 0.82 +0.3 871,090 + napA SO0848 0.83 -0.2 871,263 + -1.0 871,263 + +0.3 871,280 - -0.6 871,295 - -0.2 871,332 + +0.9 871,359 - -0.2 871,381 - -0.5 871,409 - -0.8 871,519 - -1.2 871,519 - +0.5 871,662 - napD SO0849 0.55 +1.4 871,728 - napD SO0849 0.78 +0.2 871,738 - napD SO0849 0.81 +0.9 871,745 - napD SO0849 0.84 -0.5 871,867 + +0.2 871,875 - +0.7 872,039 - +0.1 872,039 - +0.0 872,039 - -0.0 872,348 + -0.2 872,348 + +0.2 872,356 - +0.2 872,356 - -1.4 872,431 - +0.7 872,454 + +0.5 872,518 + SO0850 0.13 -0.2 872,634 - SO0850 0.21 +0.0 872,669 - SO0850 0.23 +1.2 872,673 + SO0850 0.23 +0.1 872,674 + SO0850 0.23 +0.4 872,681 - SO0850 0.23 -0.9 872,681 - SO0850 0.23 +1.3 872,724 - SO0850 0.26 +0.7 872,724 - SO0850 0.26 -0.6 872,725 - SO0850 0.26 -1.7 872,767 + SO0850 0.29 -0.8
Or see this region's nucleotide sequence