Strain Fitness in Shewanella oneidensis MR-1 around SO0741

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0740 and ggt-1 are separated by 217 nucleotidesggt-1 and SO0742 are separated by 217 nucleotides SO0740: SO0740 - melanin biosynthesis protein TyrA, putative (NCBI ptt file), at 756,464 to 757,399 SO0740 SO0741: ggt-1 - gamma-glutamyltranspeptidase (NCBI ptt file), at 757,617 to 759,254 ggt-1 SO0742: SO0742 - iron(III) ABC transporter, ATP-binding protein (NCBI ptt file), at 759,472 to 760,521 SO0742 Position (kb) 757 758 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 756.638 kb on + strand, within SO0740at 756.712 kb on + strand, within SO0740at 756.743 kb on - strand, within SO0740at 756.964 kb on + strand, within SO0740at 756.967 kb on - strand, within SO0740at 757.027 kb on - strand, within SO0740at 757.122 kb on + strand, within SO0740at 757.130 kb on - strand, within SO0740at 757.157 kb on - strand, within SO0740at 757.157 kb on - strand, within SO0740at 757.157 kb on - strand, within SO0740at 757.169 kb on + strand, within SO0740at 757.176 kb on + strand, within SO0740at 757.263 kb on - strand, within SO0740at 757.281 kb on + strand, within SO0740at 757.287 kb on - strand, within SO0740at 757.361 kb on + strandat 757.370 kb on - strandat 757.471 kb on - strandat 757.588 kb on + strandat 757.924 kb on + strand, within ggt-1at 757.934 kb on + strand, within ggt-1at 757.934 kb on + strand, within ggt-1at 757.952 kb on + strand, within ggt-1at 757.960 kb on - strand, within ggt-1at 757.962 kb on + strand, within ggt-1at 757.969 kb on + strand, within ggt-1at 758.035 kb on + strand, within ggt-1at 758.084 kb on + strand, within ggt-1at 758.091 kb on + strand, within ggt-1at 758.121 kb on - strand, within ggt-1at 758.183 kb on + strand, within ggt-1at 758.189 kb on - strand, within ggt-1at 758.189 kb on - strand, within ggt-1at 758.272 kb on + strand, within ggt-1at 758.406 kb on + strand, within ggt-1at 758.430 kb on - strand, within ggt-1at 758.463 kb on + strand, within ggt-1at 758.484 kb on + strand, within ggt-1at 758.492 kb on - strand, within ggt-1at 758.574 kb on + strand, within ggt-1at 758.581 kb on + strand, within ggt-1at 758.582 kb on - strand, within ggt-1at 758.583 kb on - strand, within ggt-1at 758.771 kb on + strand, within ggt-1at 758.779 kb on - strand, within ggt-1at 758.849 kb on - strand, within ggt-1at 758.909 kb on + strand, within ggt-1at 758.964 kb on - strand, within ggt-1at 758.979 kb on + strand, within ggt-1at 759.002 kb on + strand, within ggt-1at 759.009 kb on - strand, within ggt-1at 759.010 kb on - strand, within ggt-1at 759.026 kb on + strand, within ggt-1at 759.032 kb on - strand, within ggt-1at 759.034 kb on - strand, within ggt-1at 759.093 kb on - strandat 759.103 kb on - strandat 759.183 kb on - strandat 759.231 kb on + strandat 759.231 kb on + strandat 759.263 kb on - strandat 759.506 kb on + strandat 759.516 kb on - strandat 759.530 kb on + strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.538 kb on - strandat 759.566 kb on - strandat 759.843 kb on - strand, within SO0742at 759.845 kb on + strand, within SO0742at 759.853 kb on - strand, within SO0742at 759.877 kb on + strand, within SO0742at 759.886 kb on - strand, within SO0742at 759.923 kb on + strand, within SO0742at 759.930 kb on - strand, within SO0742at 759.959 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.969 kb on + strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 759.977 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.114 kb on - strand, within SO0742at 760.127 kb on + strand, within SO0742at 760.129 kb on - strand, within SO0742at 760.132 kb on + strand, within SO0742at 760.177 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.178 kb on + strand, within SO0742at 760.186 kb on - strand, within SO0742at 760.201 kb on - strand, within SO0742at 760.208 kb on + strand, within SO0742

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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756,638 + SO0740 0.19 -3.3
756,712 + SO0740 0.26 -3.6
756,743 - SO0740 0.30 -0.8
756,964 + SO0740 0.53 -1.7
756,967 - SO0740 0.54 +0.0
757,027 - SO0740 0.60 -1.9
757,122 + SO0740 0.70 -2.2
757,130 - SO0740 0.71 -1.1
757,157 - SO0740 0.74 -1.0
757,157 - SO0740 0.74 -0.5
757,157 - SO0740 0.74 -2.9
757,169 + SO0740 0.75 -0.2
757,176 + SO0740 0.76 -1.2
757,263 - SO0740 0.85 +0.1
757,281 + SO0740 0.87 -3.1
757,287 - SO0740 0.88 -2.0
757,361 + -2.4
757,370 - -3.4
757,471 - -0.3
757,588 + +0.1
757,924 + ggt-1 SO0741 0.19 +0.1
757,934 + ggt-1 SO0741 0.19 +0.9
757,934 + ggt-1 SO0741 0.19 +0.4
757,952 + ggt-1 SO0741 0.20 +0.5
757,960 - ggt-1 SO0741 0.21 +0.4
757,962 + ggt-1 SO0741 0.21 +0.1
757,969 + ggt-1 SO0741 0.21 +1.4
758,035 + ggt-1 SO0741 0.26 -0.2
758,084 + ggt-1 SO0741 0.29 -0.1
758,091 + ggt-1 SO0741 0.29 +0.5
758,121 - ggt-1 SO0741 0.31 +0.6
758,183 + ggt-1 SO0741 0.35 +0.9
758,189 - ggt-1 SO0741 0.35 +0.0
758,189 - ggt-1 SO0741 0.35 +0.0
758,272 + ggt-1 SO0741 0.40 -0.3
758,406 + ggt-1 SO0741 0.48 +2.5
758,430 - ggt-1 SO0741 0.50 +0.4
758,463 + ggt-1 SO0741 0.52 +0.1
758,484 + ggt-1 SO0741 0.53 -0.6
758,492 - ggt-1 SO0741 0.53 +0.2
758,574 + ggt-1 SO0741 0.58 -1.2
758,581 + ggt-1 SO0741 0.59 -0.3
758,582 - ggt-1 SO0741 0.59 +0.1
758,583 - ggt-1 SO0741 0.59 +1.5
758,771 + ggt-1 SO0741 0.70 +0.4
758,779 - ggt-1 SO0741 0.71 +0.2
758,849 - ggt-1 SO0741 0.75 +0.9
758,909 + ggt-1 SO0741 0.79 +0.3
758,964 - ggt-1 SO0741 0.82 +0.0
758,979 + ggt-1 SO0741 0.83 +0.1
759,002 + ggt-1 SO0741 0.85 +0.2
759,009 - ggt-1 SO0741 0.85 +0.4
759,010 - ggt-1 SO0741 0.85 +0.1
759,026 + ggt-1 SO0741 0.86 +0.3
759,032 - ggt-1 SO0741 0.86 -0.0
759,034 - ggt-1 SO0741 0.87 +0.3
759,093 - +0.4
759,103 - +0.2
759,183 - +0.3
759,231 + +0.0
759,231 + -0.1
759,263 - -0.1
759,506 + +0.5
759,516 - -0.8
759,530 + +1.5
759,538 - +0.4
759,538 - -0.3
759,538 - -0.3
759,538 - +0.4
759,538 - +0.5
759,538 - -0.2
759,566 - -0.5
759,843 - SO0742 0.35 -0.5
759,845 + SO0742 0.36 -0.4
759,853 - SO0742 0.36 +0.0
759,877 + SO0742 0.39 -0.4
759,886 - SO0742 0.39 -0.5
759,923 + SO0742 0.43 +1.0
759,930 - SO0742 0.44 -1.3
759,959 + SO0742 0.46 +0.3
759,969 + SO0742 0.47 +0.2
759,969 + SO0742 0.47 -0.8
759,969 + SO0742 0.47 -0.1
759,969 + SO0742 0.47 +0.4
759,969 + SO0742 0.47 +0.8
759,969 + SO0742 0.47 -0.5
759,969 + SO0742 0.47 -0.2
759,977 - SO0742 0.48 +0.1
759,977 - SO0742 0.48 +0.3
759,977 - SO0742 0.48 +0.1
759,977 - SO0742 0.48 -0.2
760,114 - SO0742 0.61 -0.5
760,114 - SO0742 0.61 +0.5
760,114 - SO0742 0.61 -1.1
760,127 + SO0742 0.62 -0.0
760,129 - SO0742 0.63 -0.3
760,132 + SO0742 0.63 -1.1
760,177 + SO0742 0.67 -0.3
760,178 + SO0742 0.67 -0.2
760,178 + SO0742 0.67 +0.5
760,186 - SO0742 0.68 +0.3
760,201 - SO0742 0.69 +0.3
760,208 + SO0742 0.70 +0.0

Or see this region's nucleotide sequence