Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0733 and SO0734 are separated by 305 nucleotides SO0734 and SO0735 are separated by 1 nucleotides SO0735 and SO0736 are separated by 14 nucleotides
SO0733: SO0733 - cold shock domain family protein (NCBI ptt file), at 748,237 to 748,848
SO0733
SO0734: SO0734 - conserved hypothetical protein (NCBI ptt file), at 749,154 to 749,510
SO0734
SO0735: SO0735 - hypothetical protein (NCBI ptt file), at 749,512 to 750,462
SO0735
SO0736: SO0736 - conserved hypothetical protein (NCBI ptt file), at 750,477 to 751,271
SO0736
Position (kb) 749
750 Strain fitness (log2 ratio) -1
0
1 at 748.164 kb on + strand at 748.167 kb on - strand at 748.167 kb on - strand at 748.245 kb on + strand at 748.374 kb on - strand, within SO0733 at 748.405 kb on + strand, within SO0733 at 748.408 kb on + strand, within SO0733 at 748.491 kb on - strand, within SO0733 at 748.545 kb on - strand, within SO0733 at 748.579 kb on + strand, within SO0733 at 748.634 kb on - strand, within SO0733 at 748.638 kb on + strand, within SO0733 at 748.646 kb on - strand, within SO0733 at 748.822 kb on + strand at 748.832 kb on + strand at 748.832 kb on + strand at 748.924 kb on + strand at 748.933 kb on - strand at 748.965 kb on - strand at 748.986 kb on - strand at 748.997 kb on + strand at 749.140 kb on - strand at 749.161 kb on + strand at 749.169 kb on - strand at 749.169 kb on - strand at 749.169 kb on - strand at 749.202 kb on + strand, within SO0734 at 749.210 kb on - strand, within SO0734 at 749.219 kb on + strand, within SO0734 at 749.235 kb on - strand, within SO0734 at 749.241 kb on + strand, within SO0734 at 749.273 kb on - strand, within SO0734 at 749.363 kb on + strand, within SO0734 at 749.371 kb on + strand, within SO0734 at 749.647 kb on - strand, within SO0735 at 749.786 kb on + strand, within SO0735 at 749.810 kb on + strand, within SO0735 at 749.828 kb on - strand, within SO0735 at 749.894 kb on + strand, within SO0735 at 749.943 kb on + strand, within SO0735 at 749.943 kb on + strand, within SO0735 at 749.951 kb on - strand, within SO0735 at 749.951 kb on - strand, within SO0735 at 749.951 kb on - strand, within SO0735 at 749.951 kb on - strand, within SO0735 at 749.951 kb on - strand, within SO0735 at 750.010 kb on + strand, within SO0735 at 750.091 kb on + strand, within SO0735 at 750.164 kb on + strand, within SO0735 at 750.164 kb on + strand, within SO0735 at 750.172 kb on - strand, within SO0735 at 750.200 kb on + strand, within SO0735 at 750.222 kb on + strand, within SO0735 at 750.222 kb on + strand, within SO0735 at 750.222 kb on + strand, within SO0735 at 750.222 kb on + strand, within SO0735 at 750.222 kb on + strand, within SO0735 at 750.224 kb on - strand, within SO0735 at 750.230 kb on - strand, within SO0735 at 750.230 kb on - strand, within SO0735 at 750.230 kb on - strand, within SO0735 at 750.258 kb on + strand, within SO0735 at 750.258 kb on + strand, within SO0735 at 750.377 kb on + strand at 750.377 kb on + strand at 750.377 kb on + strand at 750.385 kb on - strand at 750.387 kb on + strand at 750.457 kb on + strand at 750.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 748,164 + +0.1 748,167 - +0.2 748,167 - +0.4 748,245 + -0.6 748,374 - SO0733 0.22 -0.2 748,405 + SO0733 0.27 -0.4 748,408 + SO0733 0.28 -0.7 748,491 - SO0733 0.42 +0.1 748,545 - SO0733 0.50 -0.4 748,579 + SO0733 0.56 +0.1 748,634 - SO0733 0.65 +0.7 748,638 + SO0733 0.66 +0.3 748,646 - SO0733 0.67 -0.9 748,822 + -0.3 748,832 + +0.4 748,832 + -0.6 748,924 + -0.0 748,933 - +0.8 748,965 - +0.5 748,986 - -0.1 748,997 + +0.3 749,140 - +0.2 749,161 + -0.0 749,169 - -0.3 749,169 - -0.2 749,169 - +0.0 749,202 + SO0734 0.13 -1.4 749,210 - SO0734 0.16 +0.9 749,219 + SO0734 0.18 -1.2 749,235 - SO0734 0.23 +0.5 749,241 + SO0734 0.24 +0.1 749,273 - SO0734 0.33 +1.3 749,363 + SO0734 0.59 +0.6 749,371 + SO0734 0.61 +0.2 749,647 - SO0735 0.14 -0.6 749,786 + SO0735 0.29 -0.0 749,810 + SO0735 0.31 +0.6 749,828 - SO0735 0.33 +0.5 749,894 + SO0735 0.40 +0.9 749,943 + SO0735 0.45 -0.6 749,943 + SO0735 0.45 +0.3 749,951 - SO0735 0.46 +0.7 749,951 - SO0735 0.46 -0.1 749,951 - SO0735 0.46 -0.1 749,951 - SO0735 0.46 +0.9 749,951 - SO0735 0.46 -0.0 750,010 + SO0735 0.52 -0.3 750,091 + SO0735 0.61 -0.4 750,164 + SO0735 0.69 -1.1 750,164 + SO0735 0.69 +0.0 750,172 - SO0735 0.69 +0.7 750,200 + SO0735 0.72 +0.0 750,222 + SO0735 0.75 -1.1 750,222 + SO0735 0.75 +0.5 750,222 + SO0735 0.75 +0.1 750,222 + SO0735 0.75 -0.5 750,222 + SO0735 0.75 +0.1 750,224 - SO0735 0.75 +0.2 750,230 - SO0735 0.75 -0.7 750,230 - SO0735 0.75 -0.0 750,230 - SO0735 0.75 -0.8 750,258 + SO0735 0.78 -0.2 750,258 + SO0735 0.78 -0.9 750,377 + -0.1 750,377 + +0.1 750,377 + -0.5 750,385 - +0.4 750,387 + +0.1 750,457 + +1.5 750,463 - -0.4
Or see this region's nucleotide sequence