Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0297 and gmhA overlap by 4 nucleotides gmhA and SO0299 are separated by 106 nucleotides SO0299 and SO0300 overlap by 4 nucleotides
SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610
SO0297
SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200
gmhA
SO0299: SO0299 - conserved hypothetical protein TIGR00252 (NCBI ptt file), at 304,307 to 304,633
SO0299
SO0300: SO0300 - lipoprotein, putative (NCBI ptt file), at 304,630 to 306,489
SO0300
Position (kb) 304
305 Strain fitness (log2 ratio) -2
-1
0
1 at 303.313 kb on + strand, within SO0297 at 303.339 kb on + strand, within SO0297 at 303.360 kb on - strand, within SO0297 at 303.550 kb on - strand, within SO0297 at 303.566 kb on - strand at 303.600 kb on + strand at 303.799 kb on + strand, within gmhA at 303.809 kb on + strand, within gmhA at 304.090 kb on + strand, within gmhA at 304.571 kb on + strand, within SO0299 at 304.579 kb on - strand, within SO0299 at 304.593 kb on - strand, within SO0299 at 304.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 303,313 + SO0297 0.47 -2.7 303,339 + SO0297 0.52 -0.7 303,360 - SO0297 0.56 -1.0 303,550 - SO0297 0.89 -1.4 303,566 - -1.4 303,600 + -1.7 303,799 + gmhA SO0298 0.32 -0.1 303,809 + gmhA SO0298 0.34 +1.2 304,090 + gmhA SO0298 0.81 -1.8 304,571 + SO0299 0.81 +0.2 304,579 - SO0299 0.83 +0.2 304,593 - SO0299 0.87 +1.1 304,627 + -0.0
Or see this region's nucleotide sequence