Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0141 and ribB are separated by 363 nucleotides ribB and ptrB are separated by 695 nucleotides
SO0141: SO0141 - sensory box protein (NCBI ptt file), at 146,606 to 149,839
SO0141
SO0142: ribB - 3,4-dihydroxy-2-butanone 4-phosphate synthase (NCBI ptt file), at 150,203 to 150,856
ribB
SO0144: ptrB - protease II (NCBI ptt file), at 151,552 to 153,654
ptrB
Position (kb) 150
151 Strain fitness (log2 ratio) -1
0
1 at 149.251 kb on + strand, within SO0141 at 149.251 kb on + strand, within SO0141 at 149.251 kb on + strand, within SO0141 at 149.257 kb on - strand, within SO0141 at 149.264 kb on + strand, within SO0141 at 149.272 kb on - strand, within SO0141 at 149.444 kb on + strand, within SO0141 at 149.444 kb on + strand, within SO0141 at 149.460 kb on - strand, within SO0141 at 149.535 kb on + strand at 149.535 kb on + strand at 149.535 kb on + strand at 149.535 kb on + strand at 149.545 kb on - strand at 149.549 kb on + strand at 149.557 kb on - strand at 149.623 kb on + strand at 149.628 kb on + strand at 149.733 kb on + strand at 149.862 kb on - strand at 149.887 kb on + strand at 149.943 kb on + strand at 150.105 kb on - strand at 150.163 kb on - strand at 150.185 kb on - strand at 150.247 kb on + strand at 150.318 kb on + strand, within ribB at 150.410 kb on + strand, within ribB at 150.418 kb on - strand, within ribB at 150.446 kb on + strand, within ribB at 150.548 kb on - strand, within ribB at 150.589 kb on + strand, within ribB at 150.712 kb on - strand, within ribB at 150.749 kb on + strand, within ribB at 150.780 kb on + strand, within ribB at 150.827 kb on + strand at 150.840 kb on + strand at 150.939 kb on + strand at 150.942 kb on - strand at 150.942 kb on - strand at 151.013 kb on - strand at 151.084 kb on - strand at 151.098 kb on + strand at 151.106 kb on - strand at 151.141 kb on + strand at 151.192 kb on - strand at 151.312 kb on + strand at 151.432 kb on + strand at 151.518 kb on + strand at 151.536 kb on - strand at 151.546 kb on - strand at 151.590 kb on - strand at 151.707 kb on + strand at 151.707 kb on + strand at 151.707 kb on + strand at 151.707 kb on + strand at 151.707 kb on + strand at 151.707 kb on + strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.715 kb on - strand at 151.734 kb on + strand at 151.747 kb on - strand at 151.757 kb on - strand at 151.812 kb on - strand, within ptrB at 151.841 kb on + strand, within ptrB
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 149,251 + SO0141 0.82 +0.1 149,251 + SO0141 0.82 +0.4 149,251 + SO0141 0.82 +0.3 149,257 - SO0141 0.82 +0.4 149,264 + SO0141 0.82 +0.4 149,272 - SO0141 0.82 -0.6 149,444 + SO0141 0.88 -0.3 149,444 + SO0141 0.88 +0.4 149,460 - SO0141 0.88 -0.3 149,535 + -0.4 149,535 + +0.2 149,535 + +0.4 149,535 + -0.7 149,545 - -0.1 149,549 + -0.1 149,557 - -0.6 149,623 + -0.7 149,628 + -0.4 149,733 + +0.2 149,862 - -0.8 149,887 + -0.1 149,943 + -0.2 150,105 - +0.2 150,163 - +0.0 150,185 - -0.5 150,247 + +0.1 150,318 + ribB SO0142 0.18 +0.8 150,410 + ribB SO0142 0.32 +0.5 150,418 - ribB SO0142 0.33 +0.2 150,446 + ribB SO0142 0.37 -0.2 150,548 - ribB SO0142 0.53 +0.8 150,589 + ribB SO0142 0.59 +0.5 150,712 - ribB SO0142 0.78 +0.3 150,749 + ribB SO0142 0.83 +0.5 150,780 + ribB SO0142 0.88 +0.7 150,827 + -0.3 150,840 + -0.3 150,939 + -0.7 150,942 - -0.5 150,942 - +0.1 151,013 - -0.2 151,084 - +0.5 151,098 + +0.6 151,106 - +0.2 151,141 + -0.3 151,192 - -0.0 151,312 + +0.9 151,432 + +0.6 151,518 + -0.3 151,536 - +0.0 151,546 - -0.3 151,590 - +1.1 151,707 + -0.6 151,707 + +0.5 151,707 + +0.2 151,707 + +0.7 151,707 + +0.1 151,707 + -0.9 151,715 - +0.8 151,715 - +0.1 151,715 - -0.1 151,715 - +0.2 151,715 - -0.8 151,715 - -0.7 151,715 - +0.4 151,734 + +0.4 151,747 - -0.3 151,757 - +0.3 151,812 - ptrB SO0144 0.12 -0.2 151,841 + ptrB SO0144 0.14 +0.4
Or see this region's nucleotide sequence