Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0080 and SO0081 are separated by 213 nucleotides SO0081 and SO0082 are separated by 3 nucleotides SO0082 and SO0083 are separated by 187 nucleotides SO0083 and SO0084 are separated by 57 nucleotides
SO0080: SO0080 - hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file), at 93,185 to 93,613
SO0080
SO0081: SO0081 - conserved hypothetical protein (NCBI ptt file), at 93,827 to 94,156
SO0081
SO0082: SO0082 - transcriptional regulator, MerR family (NCBI ptt file), at 94,160 to 94,516
SO0082
SO0083: SO0083 - carboxymuconolactone decarboxylase family protein (NCBI ptt file), at 94,704 to 95,090
SO0083
SO0084: SO0084 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 95,148 to 95,828
SO0084
Position (kb)
94
95 Strain fitness (log2 ratio)
-1
0
1 at 93.162 kb on - strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.183 kb on + strand at 93.191 kb on - strand at 93.191 kb on - strand at 93.191 kb on - strand at 93.191 kb on - strand at 93.191 kb on - strand at 93.191 kb on - strand at 93.215 kb on + strand at 93.215 kb on + strand at 93.281 kb on + strand, within SO0080 at 93.286 kb on + strand, within SO0080 at 93.288 kb on + strand, within SO0080 at 93.371 kb on + strand, within SO0080 at 93.379 kb on - strand, within SO0080 at 93.379 kb on - strand, within SO0080 at 93.447 kb on + strand, within SO0080 at 93.455 kb on - strand, within SO0080 at 93.525 kb on + strand, within SO0080 at 93.591 kb on - strand at 93.624 kb on - strand at 93.624 kb on - strand at 93.698 kb on + strand at 93.698 kb on + strand at 93.706 kb on - strand at 93.706 kb on - strand at 93.718 kb on + strand at 93.718 kb on + strand at 93.726 kb on - strand at 93.726 kb on - strand at 93.726 kb on - strand at 93.777 kb on + strand at 93.838 kb on - strand at 93.838 kb on - strand at 93.895 kb on + strand, within SO0081 at 93.943 kb on + strand, within SO0081 at 94.037 kb on - strand, within SO0081 at 94.089 kb on + strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.186 kb on + strand at 94.304 kb on - strand, within SO0082 at 94.364 kb on - strand, within SO0082 at 94.377 kb on - strand, within SO0082 at 94.434 kb on - strand, within SO0082 at 94.451 kb on + strand, within SO0082 at 94.597 kb on + strand at 94.605 kb on - strand at 94.654 kb on + strand at 94.663 kb on - strand at 94.669 kb on - strand at 94.669 kb on - strand at 94.670 kb on - strand at 94.722 kb on + strand at 94.740 kb on - strand at 94.811 kb on - strand, within SO0083 at 94.839 kb on - strand, within SO0083 at 94.891 kb on - strand, within SO0083 at 94.934 kb on - strand, within SO0083 at 94.938 kb on + strand, within SO0083 at 95.316 kb on + strand, within SO0084 at 95.471 kb on + strand, within SO0084
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 93,162 - -0.0 93,183 + -0.3 93,183 + +0.0 93,183 + -0.5 93,183 + -0.2 93,183 + -0.1 93,183 + -0.4 93,183 + +0.2 93,191 - +0.1 93,191 - -0.3 93,191 - +0.3 93,191 - -0.1 93,191 - -0.0 93,191 - -0.3 93,215 + +0.1 93,215 + +0.1 93,281 + SO0080 0.22 +0.8 93,286 + SO0080 0.24 -0.5 93,288 + SO0080 0.24 -0.1 93,371 + SO0080 0.43 +0.5 93,379 - SO0080 0.45 -0.1 93,379 - SO0080 0.45 -1.1 93,447 + SO0080 0.61 -0.3 93,455 - SO0080 0.63 -0.3 93,525 + SO0080 0.79 +0.0 93,591 - -0.5 93,624 - -1.1 93,624 - +0.4 93,698 + -0.3 93,698 + -0.7 93,706 - -0.6 93,706 - -0.5 93,718 + -0.2 93,718 + +0.5 93,726 - +0.0 93,726 - -0.3 93,726 - +0.4 93,777 + +0.2 93,838 - +0.5 93,838 - -1.5 93,895 + SO0081 0.21 -1.5 93,943 + SO0081 0.35 -0.1 94,037 - SO0081 0.64 +0.3 94,089 + SO0081 0.79 -0.4 94,097 - SO0081 0.82 +0.0 94,097 - SO0081 0.82 +1.4 94,097 - SO0081 0.82 -0.2 94,186 + +0.2 94,304 - SO0082 0.40 +0.4 94,364 - SO0082 0.57 -1.4 94,377 - SO0082 0.61 +0.5 94,434 - SO0082 0.77 -0.2 94,451 + SO0082 0.82 +0.9 94,597 + -0.4 94,605 - +0.9 94,654 + -0.8 94,663 - +0.5 94,669 - -0.4 94,669 - -0.2 94,670 - +0.5 94,722 + -0.6 94,740 - -0.5 94,811 - SO0083 0.28 +0.8 94,839 - SO0083 0.35 +1.1 94,891 - SO0083 0.48 -0.4 94,934 - SO0083 0.59 -1.7 94,938 + SO0083 0.60 -0.3 95,316 + SO0084 0.25 -0.1 95,471 + SO0084 0.47 -0.4
Or see this region's nucleotide sequence