Strain Fitness in Shewanella oneidensis MR-1 around SO0082

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0080 and SO0081 are separated by 213 nucleotidesSO0081 and SO0082 are separated by 3 nucleotidesSO0082 and SO0083 are separated by 187 nucleotidesSO0083 and SO0084 are separated by 57 nucleotides SO0080: SO0080 - hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file), at 93,185 to 93,613 SO0080 SO0081: SO0081 - conserved hypothetical protein (NCBI ptt file), at 93,827 to 94,156 SO0081 SO0082: SO0082 - transcriptional regulator, MerR family (NCBI ptt file), at 94,160 to 94,516 SO0082 SO0083: SO0083 - carboxymuconolactone decarboxylase family protein (NCBI ptt file), at 94,704 to 95,090 SO0083 SO0084: SO0084 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 95,148 to 95,828 SO0084 Position (kb) 94 95Strain fitness (log2 ratio) -1 0 1at 93.162 kb on - strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.183 kb on + strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.191 kb on - strandat 93.215 kb on + strandat 93.215 kb on + strandat 93.281 kb on + strand, within SO0080at 93.286 kb on + strand, within SO0080at 93.288 kb on + strand, within SO0080at 93.371 kb on + strand, within SO0080at 93.379 kb on - strand, within SO0080at 93.379 kb on - strand, within SO0080at 93.447 kb on + strand, within SO0080at 93.455 kb on - strand, within SO0080at 93.525 kb on + strand, within SO0080at 93.591 kb on - strandat 93.624 kb on - strandat 93.624 kb on - strandat 93.698 kb on + strandat 93.698 kb on + strandat 93.706 kb on - strandat 93.706 kb on - strandat 93.718 kb on + strandat 93.718 kb on + strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.726 kb on - strandat 93.777 kb on + strandat 93.838 kb on - strandat 93.838 kb on - strandat 93.895 kb on + strand, within SO0081at 93.943 kb on + strand, within SO0081at 94.037 kb on - strand, within SO0081at 94.089 kb on + strand, within SO0081at 94.097 kb on - strand, within SO0081at 94.097 kb on - strand, within SO0081at 94.097 kb on - strand, within SO0081at 94.186 kb on + strandat 94.304 kb on - strand, within SO0082at 94.364 kb on - strand, within SO0082at 94.377 kb on - strand, within SO0082at 94.434 kb on - strand, within SO0082at 94.451 kb on + strand, within SO0082at 94.597 kb on + strandat 94.605 kb on - strandat 94.654 kb on + strandat 94.663 kb on - strandat 94.669 kb on - strandat 94.669 kb on - strandat 94.670 kb on - strandat 94.722 kb on + strandat 94.740 kb on - strandat 94.811 kb on - strand, within SO0083at 94.839 kb on - strand, within SO0083at 94.891 kb on - strand, within SO0083at 94.934 kb on - strand, within SO0083at 94.938 kb on + strand, within SO0083at 95.316 kb on + strand, within SO0084at 95.471 kb on + strand, within SO0084

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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93,162 - -0.0
93,183 + -0.3
93,183 + +0.0
93,183 + -0.5
93,183 + -0.2
93,183 + -0.1
93,183 + -0.4
93,183 + +0.2
93,191 - +0.1
93,191 - -0.3
93,191 - +0.3
93,191 - -0.1
93,191 - -0.0
93,191 - -0.3
93,215 + +0.1
93,215 + +0.1
93,281 + SO0080 0.22 +0.8
93,286 + SO0080 0.24 -0.5
93,288 + SO0080 0.24 -0.1
93,371 + SO0080 0.43 +0.5
93,379 - SO0080 0.45 -0.1
93,379 - SO0080 0.45 -1.1
93,447 + SO0080 0.61 -0.3
93,455 - SO0080 0.63 -0.3
93,525 + SO0080 0.79 +0.0
93,591 - -0.5
93,624 - -1.1
93,624 - +0.4
93,698 + -0.3
93,698 + -0.7
93,706 - -0.6
93,706 - -0.5
93,718 + -0.2
93,718 + +0.5
93,726 - +0.0
93,726 - -0.3
93,726 - +0.4
93,777 + +0.2
93,838 - +0.5
93,838 - -1.5
93,895 + SO0081 0.21 -1.5
93,943 + SO0081 0.35 -0.1
94,037 - SO0081 0.64 +0.3
94,089 + SO0081 0.79 -0.4
94,097 - SO0081 0.82 +0.0
94,097 - SO0081 0.82 +1.4
94,097 - SO0081 0.82 -0.2
94,186 + +0.2
94,304 - SO0082 0.40 +0.4
94,364 - SO0082 0.57 -1.4
94,377 - SO0082 0.61 +0.5
94,434 - SO0082 0.77 -0.2
94,451 + SO0082 0.82 +0.9
94,597 + -0.4
94,605 - +0.9
94,654 + -0.8
94,663 - +0.5
94,669 - -0.4
94,669 - -0.2
94,670 - +0.5
94,722 + -0.6
94,740 - -0.5
94,811 - SO0083 0.28 +0.8
94,839 - SO0083 0.35 +1.1
94,891 - SO0083 0.48 -0.4
94,934 - SO0083 0.59 -1.7
94,938 + SO0083 0.60 -0.3
95,316 + SO0084 0.25 -0.1
95,471 + SO0084 0.47 -0.4

Or see this region's nucleotide sequence