Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkH-2 and trkA are separated by 11 nucleotides trkA and sun are separated by 15 nucleotides
SO0028: trkH-2 - potassium uptake protein TrkH (NCBI ptt file), at 32,252 to 33,694
trkH-2
SO0029: trkA - potassium uptake protein TrkA (NCBI ptt file), at 33,706 to 35,115
trkA
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.730 kb on + strand, within trkH-2 at 32.747 kb on + strand, within trkH-2 at 32.798 kb on - strand, within trkH-2 at 32.818 kb on + strand, within trkH-2 at 32.890 kb on - strand, within trkH-2 at 32.891 kb on - strand, within trkH-2 at 32.891 kb on - strand, within trkH-2 at 32.900 kb on + strand, within trkH-2 at 32.908 kb on + strand, within trkH-2 at 32.908 kb on - strand, within trkH-2 at 32.935 kb on + strand, within trkH-2 at 32.940 kb on + strand, within trkH-2 at 32.948 kb on - strand, within trkH-2 at 32.948 kb on - strand, within trkH-2 at 32.950 kb on - strand, within trkH-2 at 32.988 kb on - strand, within trkH-2 at 33.068 kb on + strand, within trkH-2 at 33.075 kb on + strand, within trkH-2 at 33.083 kb on - strand, within trkH-2 at 33.218 kb on - strand, within trkH-2 at 33.235 kb on + strand, within trkH-2 at 33.235 kb on + strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.243 kb on - strand, within trkH-2 at 33.245 kb on + strand, within trkH-2 at 33.283 kb on + strand, within trkH-2 at 33.327 kb on + strand, within trkH-2 at 33.366 kb on - strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.424 kb on + strand, within trkH-2 at 33.432 kb on - strand, within trkH-2 at 33.502 kb on + strand, within trkH-2 at 33.523 kb on - strand, within trkH-2 at 33.571 kb on + strand at 33.582 kb on - strand at 33.629 kb on + strand at 33.629 kb on + strand at 33.637 kb on - strand at 33.637 kb on - strand at 33.644 kb on - strand at 33.691 kb on + strand at 33.704 kb on - strand at 33.780 kb on - strand at 33.911 kb on - strand, within trkA at 33.913 kb on + strand, within trkA at 33.943 kb on + strand, within trkA at 34.621 kb on + strand, within trkA at 35.212 kb on - strand at 35.242 kb on - strand at 35.242 kb on - strand at 35.243 kb on + strand at 35.286 kb on - strand, within sun at 35.301 kb on + strand, within sun at 35.663 kb on - strand, within sun at 35.730 kb on + strand, within sun at 35.740 kb on + strand, within sun at 35.764 kb on - strand, within sun at 35.843 kb on + strand, within sun at 35.843 kb on + strand, within sun at 35.915 kb on - strand, within sun at 35.922 kb on + strand, within sun at 35.937 kb on + strand, within sun at 35.937 kb on + strand, within sun at 36.046 kb on + strand, within sun at 36.068 kb on + strand, within sun
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 32,730 + trkH-2 SO0028 0.33 -0.6 32,747 + trkH-2 SO0028 0.34 -0.4 32,798 - trkH-2 SO0028 0.38 +0.1 32,818 + trkH-2 SO0028 0.39 +0.1 32,890 - trkH-2 SO0028 0.44 -0.3 32,891 - trkH-2 SO0028 0.44 +0.3 32,891 - trkH-2 SO0028 0.44 -0.6 32,900 + trkH-2 SO0028 0.45 +0.2 32,908 + trkH-2 SO0028 0.45 +0.7 32,908 - trkH-2 SO0028 0.45 -0.4 32,935 + trkH-2 SO0028 0.47 -0.3 32,940 + trkH-2 SO0028 0.48 +0.3 32,948 - trkH-2 SO0028 0.48 +0.5 32,948 - trkH-2 SO0028 0.48 +1.5 32,950 - trkH-2 SO0028 0.48 -0.4 32,988 - trkH-2 SO0028 0.51 +1.0 33,068 + trkH-2 SO0028 0.57 +0.3 33,075 + trkH-2 SO0028 0.57 +0.0 33,083 - trkH-2 SO0028 0.58 -0.9 33,218 - trkH-2 SO0028 0.67 +0.4 33,235 + trkH-2 SO0028 0.68 +1.9 33,235 + trkH-2 SO0028 0.68 -0.1 33,243 - trkH-2 SO0028 0.69 +0.4 33,243 - trkH-2 SO0028 0.69 -0.5 33,243 - trkH-2 SO0028 0.69 -0.2 33,245 + trkH-2 SO0028 0.69 -0.8 33,283 + trkH-2 SO0028 0.71 +1.5 33,327 + trkH-2 SO0028 0.74 -0.1 33,366 - trkH-2 SO0028 0.77 -1.0 33,424 + trkH-2 SO0028 0.81 +0.4 33,424 + trkH-2 SO0028 0.81 -0.6 33,424 + trkH-2 SO0028 0.81 -0.2 33,432 - trkH-2 SO0028 0.82 +0.7 33,502 + trkH-2 SO0028 0.87 +0.1 33,523 - trkH-2 SO0028 0.88 +0.1 33,571 + -0.0 33,582 - -0.3 33,629 + -0.2 33,629 + -0.1 33,637 - +0.1 33,637 - +0.0 33,644 - +0.7 33,691 + -0.0 33,704 - -0.9 33,780 - -0.5 33,911 - trkA SO0029 0.15 -1.5 33,913 + trkA SO0029 0.15 -0.2 33,943 + trkA SO0029 0.17 -0.9 34,621 + trkA SO0029 0.65 -0.2 35,212 - -0.5 35,242 - -1.3 35,242 - -1.2 35,243 + +0.2 35,286 - sun SO0030 0.12 -0.2 35,301 + sun SO0030 0.13 -1.8 35,663 - sun SO0030 0.41 -0.4 35,730 + sun SO0030 0.47 +0.2 35,740 + sun SO0030 0.47 +0.2 35,764 - sun SO0030 0.49 -0.5 35,843 + sun SO0030 0.55 -0.6 35,843 + sun SO0030 0.55 -0.9 35,915 - sun SO0030 0.61 +0.0 35,922 + sun SO0030 0.61 -0.1 35,937 + sun SO0030 0.63 +0.3 35,937 + sun SO0030 0.63 -1.0 36,046 + sun SO0030 0.71 -0.4 36,068 + sun SO0030 0.73 +0.2
Or see this region's nucleotide sequence