Strain Fitness in Shewanella oneidensis MR-1 around SO2694

Experiment: L-Lysine 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 50 mM
2,812,499	+		SO2693	0.40	-0.6
2,812,649	+		SO2693	0.50	-0.4
2,812,682	-		SO2693	0.52	-0.7
2,812,698	-		SO2693	0.54	+0.1
2,812,813	+		SO2693	0.61	-0.2
2,812,821	-		SO2693	0.62	-0.2
2,812,874	-		SO2693	0.65	-0.3
2,812,918	-		SO2693	0.68	-0.5
2,812,981	-		SO2693	0.73	-0.3
2,813,027	+		SO2693	0.76	-1.0
2,813,093	+		SO2693	0.80	-0.1
2,813,261	+				-1.1
2,813,261	+				-0.1
2,813,261	+				-2.1
2,813,273	+				-0.8
2,813,322	+				-0.4
2,813,322	+				-0.0
2,813,486	+		SO2694	0.24	+0.8
2,813,507	-		SO2694	0.30	-0.0
2,813,514	-		SO2694	0.32	+0.2
2,813,514	-		SO2694	0.32	+0.1
2,813,516	+		SO2694	0.32	+0.5
2,813,540	-		SO2694	0.39	+0.5
2,813,549	+		SO2694	0.42	+0.7
2,813,611	+		SO2694	0.59	+0.5
2,813,611	+		SO2694	0.59	+1.0
2,813,624	+		SO2694	0.63	+1.1
2,813,696	-		SO2694	0.83	-0.7
2,813,696	-		SO2694	0.83	+0.5
2,813,725	+				+0.2
2,813,734	-				-0.9
2,813,749	+				-0.9
2,813,797	+		SO2695	0.12	-1.0
2,813,811	+		SO2695	0.16	-0.0
2,813,830	-		SO2695	0.21	-0.1
2,813,866	+		SO2695	0.31	-0.8
2,813,867	+		SO2695	0.31	-0.4
2,813,874	-		SO2695	0.33	-0.4
2,813,875	-		SO2695	0.33	-0.2
2,813,935	+		SO2695	0.50	+0.2
2,813,935	+		SO2695	0.50	-0.2
2,813,935	+		SO2695	0.50	+0.7
2,813,935	+		SO2695	0.50	-0.3
2,813,935	+		SO2695	0.50	+0.2
2,813,935	+		SO2695	0.50	-0.5
2,813,935	+		SO2695	0.50	+0.1
2,813,935	+		SO2695	0.50	+0.1
2,813,943	-		SO2695	0.52	+0.1
2,813,978	+		SO2695	0.62	-0.4
2,813,989	+		SO2695	0.65	+0.3
2,814,036	+		SO2695	0.78	-0.7
2,814,036	+		SO2695	0.78	+1.0
2,814,036	+		SO2695	0.78	-0.3
2,814,036	+		SO2695	0.78	-0.1
2,814,038	-		SO2695	0.79	-0.1
2,814,041	+		SO2695	0.79	+0.1
2,814,041	+		SO2695	0.79	-1.1
2,814,041	+		SO2695	0.79	+0.5
2,814,041	+		SO2695	0.79	-0.1
2,814,041	+		SO2695	0.79	-0.5
2,814,044	-		SO2695	0.80	-0.6
2,814,044	-		SO2695	0.80	+0.1
2,814,049	-		SO2695	0.82	+0.6
2,814,049	-		SO2695	0.82	-0.3
2,814,049	-		SO2695	0.82	-0.3
2,814,108	+				-0.5
2,814,108	+				+0.4
2,814,108	+				-0.4
2,814,108	+				+0.3
2,814,108	+				+0.1
2,814,108	+				-0.5
2,814,108	+				+0.0
2,814,108	+				-1.0
2,814,108	+				-0.8
2,814,108	+				-0.2
2,814,108	+				-0.1
2,814,108	+				+0.1
2,814,108	+				-0.7
2,814,108	+				-0.2
2,814,108	+				+0.9
2,814,108	+				+0.0
2,814,108	+				+0.5
2,814,108	+				-0.7
2,814,108	+				-1.4
2,814,108	+				-0.3
2,814,108	+				-0.7
2,814,116	-				-0.0
2,814,116	-				-0.2
2,814,116	-				-0.7
2,814,116	-				+1.2
2,814,116	-				-0.5
2,814,116	-				+0.6
2,814,116	-				+1.0
2,814,116	-				+0.2
2,814,116	-				-0.5
2,814,116	-				-0.3
2,814,116	-				+0.3
2,814,116	-				-0.3
2,814,116	-				-0.3
2,814,116	-				+0.1
2,814,116	-				+0.2
2,814,116	-				+1.0
2,814,116	-				+0.1
2,814,116	-				-0.5
2,814,116	-				+0.2
2,814,116	-				-1.0
2,814,116	-				-1.2
2,814,116	-				-0.3
2,814,116	-				-0.5
2,814,116	-				-0.4
2,814,116	-				-0.4
2,814,116	-				+0.8
2,814,116	-				+0.3
2,814,116	-				-1.5
2,814,116	-				-0.3
2,814,116	-				+0.5
2,814,118	+				+0.2
2,814,137	-				-0.7
2,814,137	-				+0.2
2,814,137	-				+0.2
2,814,216	+				+0.4
2,814,216	+				+0.3
2,814,216	+				-0.9
2,814,216	+				-0.5
2,814,224	-				-0.2
2,814,224	-				-0.4
2,814,267	+				-0.0
2,814,267	+				-0.4
2,814,267	+				-0.2
2,814,267	+				-0.5
2,814,267	+				+0.6
2,814,275	-				-0.2
2,814,275	-				-1.2
2,814,275	-				-0.8
2,814,360	-				-0.6
2,814,368	+				+1.0
2,814,403	+				-0.2
2,814,404	-				+0.4
2,814,411	-		SO2697	0.10	-0.1
2,814,436	-		SO2697	0.12	-0.1
2,814,520	+		SO2697	0.17	-0.6
2,814,520	+		SO2697	0.17	-0.9
2,814,520	+		SO2697	0.17	+0.3
2,814,520	+		SO2697	0.17	-0.1
2,814,520	+		SO2697	0.17	-0.3
2,814,520	+		SO2697	0.17	+0.4
2,814,520	+		SO2697	0.17	+0.0
2,814,520	+		SO2697	0.17	-0.2
2,814,521	+		SO2697	0.17	-0.6
2,814,528	-		SO2697	0.17	+0.5
2,814,528	-		SO2697	0.17	-0.8
2,814,528	-		SO2697	0.17	+0.3
2,814,528	-		SO2697	0.17	-0.6
2,814,528	-		SO2697	0.17	-0.3
2,814,543	-		SO2697	0.18	+0.6
2,814,553	+		SO2697	0.19	-0.6
2,814,586	+		SO2697	0.21	-0.0
2,814,586	+		SO2697	0.21	+0.2
2,814,586	+		SO2697	0.21	+0.0
2,814,594	-		SO2697	0.21	+0.6
2,814,594	-		SO2697	0.21	-0.0
2,814,594	-		SO2697	0.21	+0.5
2,814,624	-		SO2697	0.23	+0.2
2,814,631	+		SO2697	0.24	-0.4
2,814,632	-		SO2697	0.24	-0.3
2,814,639	-		SO2697	0.24	-0.4
2,814,639	-		SO2697	0.24	-0.3
2,814,663	+		SO2697	0.25	+0.6
2,814,667	-		SO2697	0.26	+0.3
2,814,686	+		SO2697	0.27	+0.0
2,814,691	-		SO2697	0.27	+0.0
2,814,691	-		SO2697	0.27	+0.4
2,814,705	+		SO2697	0.28	-0.0
2,814,705	+		SO2697	0.28	-0.1
2,814,712	+		SO2697	0.28	+1.2
2,814,712	+		SO2697	0.28	-1.2
2,814,712	+		SO2697	0.28	-0.3
2,814,713	-		SO2697	0.28	-0.4
2,814,713	-		SO2697	0.28	+0.0
2,814,713	-		SO2697	0.28	-0.0
2,814,713	-		SO2697	0.28	-0.5
2,814,717	+		SO2697	0.29	+0.4
2,814,719	-		SO2697	0.29	+0.5
2,814,723	+		SO2697	0.29	+0.7
2,814,723	+		SO2697	0.29	+0.5
2,814,725	-		SO2697	0.29	-1.3
2,814,731	-		SO2697	0.30	-0.1
2,814,734	+		SO2697	0.30	-0.7
2,814,734	+		SO2697	0.30	+1.7
2,814,734	+		SO2697	0.30	+0.3
2,814,734	+		SO2697	0.30	+0.2
2,814,734	+		SO2697	0.30	-0.1
2,814,734	+		SO2697	0.30	+0.2
2,814,734	+		SO2697	0.30	-0.7
2,814,734	+		SO2697	0.30	-0.0
2,814,734	+		SO2697	0.30	-0.6
2,814,734	+		SO2697	0.30	-0.8
2,814,742	-		SO2697	0.30	-0.4
2,814,742	-		SO2697	0.30	-0.3
2,814,742	-		SO2697	0.30	-0.2
2,814,743	-		SO2697	0.30	+0.2