Experiment: L-Lysine 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpmA and SO0050 are separated by 264 nucleotides SO0050 and SO0051 overlap by 18 nucleotides SO0051 and secB are separated by 186 nucleotides secB and gpsA are separated by 4 nucleotides
SO0049: gpmA - phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI ptt file), at 55,600 to 57,144
gpmA
SO0050: SO0050 - rhodanese domain protein (NCBI ptt file), at 57,409 to 57,843
SO0050
SO0051: SO0051 - hypothetical protein (NCBI ptt file), at 57,826 to 57,918
SO0051
SO0052: secB - protein-export protein SecB (NCBI ptt file), at 58,105 to 58,578
secB
SO0053: gpsA - glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file), at 58,583 to 59,599
gpsA
Position (kb) 57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.235 kb on + strand at 57.236 kb on + strand at 57.297 kb on + strand at 57.302 kb on + strand at 57.327 kb on + strand at 57.336 kb on + strand at 57.366 kb on - strand at 57.371 kb on - strand at 57.371 kb on - strand at 57.371 kb on - strand at 57.399 kb on + strand at 57.435 kb on + strand at 57.443 kb on - strand at 57.443 kb on - strand at 57.443 kb on - strand at 57.453 kb on - strand, within SO0050 at 57.481 kb on + strand, within SO0050 at 57.499 kb on - strand, within SO0050 at 57.553 kb on - strand, within SO0050 at 57.695 kb on + strand, within SO0050 at 57.728 kb on + strand, within SO0050 at 57.811 kb on + strand at 57.893 kb on + strand, within SO0051 at 57.893 kb on + strand, within SO0051 at 57.979 kb on + strand at 57.979 kb on + strand at 57.989 kb on + strand at 58.027 kb on + strand at 58.027 kb on + strand at 58.027 kb on + strand at 58.027 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 100 mM remove 57,235 + -0.4 57,236 + -0.3 57,297 + -0.6 57,302 + -0.1 57,327 + -1.0 57,336 + +0.1 57,366 - -0.5 57,371 - -1.1 57,371 - +0.5 57,371 - +0.8 57,399 + -0.3 57,435 + -0.8 57,443 - -0.2 57,443 - -0.1 57,443 - +0.6 57,453 - SO0050 0.10 -0.2 57,481 + SO0050 0.17 -0.1 57,499 - SO0050 0.21 +0.3 57,553 - SO0050 0.33 -1.8 57,695 + SO0050 0.66 +3.5 57,728 + SO0050 0.73 +1.9 57,811 + +1.4 57,893 + SO0051 0.72 +2.3 57,893 + SO0051 0.72 +1.9 57,979 + +2.4 57,979 + +2.0 57,989 + +1.3 58,027 + +1.1 58,027 + +3.5 58,027 + +2.3 58,027 + +3.4
Or see this region's nucleotide sequence