Strain Fitness in Shewanella oneidensis MR-1 around SO4717

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO4715 and SO4716 are separated by 99 nucleotidesSO4716 and SO4717 are separated by 261 nucleotidesSO4717 and SO4718 are separated by 0 nucleotides SO4715: SO4715 - conserved hypothetical protein (NCBI ptt file), at 4,918,907 to 4,919,566 SO4715 SO4716: SO4716 - acetyltransferase, GNAT family (NCBI ptt file), at 4,919,666 to 4,920,133 SO4716 SO4717: SO4717 - sensor histidine kinase (NCBI ptt file), at 4,920,395 to 4,922,524 SO4717 SO4718: SO4718 - sigma-54 dependent response regulator (NCBI ptt file), at 4,922,525 to 4,923,907 SO4718 Position (kb) 4920 4921 4922 4923Strain fitness (log2 ratio) -2 -1 0 1 2at 4919.401 kb on - strand, within SO4715at 4919.412 kb on + strand, within SO4715at 4919.412 kb on + strand, within SO4715at 4919.412 kb on + strand, within SO4715at 4919.412 kb on + strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.420 kb on - strand, within SO4715at 4919.457 kb on + strand, within SO4715at 4919.465 kb on - strand, within SO4715at 4919.465 kb on - strand, within SO4715at 4919.480 kb on + strand, within SO4715at 4919.488 kb on - strand, within SO4715at 4919.623 kb on + strandat 4919.696 kb on + strandat 4919.703 kb on + strandat 4919.703 kb on + strandat 4919.724 kb on + strand, within SO4716at 4919.767 kb on + strand, within SO4716at 4919.798 kb on + strand, within SO4716at 4919.929 kb on - strand, within SO4716at 4919.933 kb on + strand, within SO4716at 4919.941 kb on - strand, within SO4716at 4920.072 kb on - strand, within SO4716at 4920.083 kb on + strand, within SO4716at 4920.523 kb on - strandat 4920.630 kb on + strand, within SO4717at 4920.630 kb on + strand, within SO4717at 4920.638 kb on + strand, within SO4717at 4920.691 kb on - strand, within SO4717at 4920.697 kb on + strand, within SO4717at 4920.754 kb on + strand, within SO4717at 4920.762 kb on - strand, within SO4717at 4920.802 kb on - strand, within SO4717at 4920.802 kb on - strand, within SO4717at 4920.838 kb on - strand, within SO4717at 4920.918 kb on + strand, within SO4717at 4920.926 kb on - strand, within SO4717at 4920.926 kb on - strand, within SO4717at 4920.941 kb on + strand, within SO4717at 4921.036 kb on + strand, within SO4717at 4921.044 kb on - strand, within SO4717at 4921.074 kb on - strand, within SO4717at 4921.151 kb on - strand, within SO4717at 4921.179 kb on + strand, within SO4717at 4921.179 kb on + strand, within SO4717at 4921.207 kb on - strand, within SO4717at 4921.213 kb on + strand, within SO4717at 4921.221 kb on - strand, within SO4717at 4921.221 kb on - strand, within SO4717at 4921.221 kb on - strand, within SO4717at 4921.249 kb on + strand, within SO4717at 4921.268 kb on - strand, within SO4717at 4921.268 kb on - strand, within SO4717at 4921.268 kb on - strand, within SO4717at 4921.389 kb on + strand, within SO4717at 4921.397 kb on - strand, within SO4717at 4921.397 kb on - strand, within SO4717at 4921.438 kb on - strand, within SO4717at 4921.478 kb on + strand, within SO4717at 4921.478 kb on + strand, within SO4717at 4921.478 kb on + strand, within SO4717at 4921.478 kb on + strand, within SO4717at 4921.486 kb on - strand, within SO4717at 4921.638 kb on + strand, within SO4717at 4921.663 kb on - strand, within SO4717at 4921.800 kb on - strand, within SO4717at 4921.873 kb on + strand, within SO4717at 4921.919 kb on + strand, within SO4717at 4921.930 kb on + strand, within SO4717at 4921.938 kb on - strandat 4921.940 kb on + strand, within SO4717at 4922.062 kb on - strand, within SO4717at 4922.068 kb on + strand, within SO4717at 4922.068 kb on + strand, within SO4717at 4922.076 kb on - strand, within SO4717at 4922.076 kb on - strand, within SO4717at 4922.076 kb on - strand, within SO4717at 4922.078 kb on + strand, within SO4717at 4922.142 kb on + strand, within SO4717at 4922.150 kb on - strand, within SO4717at 4922.150 kb on - strand, within SO4717at 4922.199 kb on - strand, within SO4717at 4922.214 kb on - strand, within SO4717at 4922.271 kb on - strand, within SO4717at 4922.276 kb on + strand, within SO4717at 4922.324 kb on + strandat 4922.547 kb on + strandat 4922.600 kb on + strandat 4922.600 kb on + strandat 4922.608 kb on - strandat 4922.608 kb on - strandat 4922.718 kb on + strand, within SO4718at 4922.726 kb on - strand, within SO4718at 4922.761 kb on + strand, within SO4718at 4922.784 kb on - strand, within SO4718at 4922.846 kb on + strand, within SO4718at 4922.847 kb on + strand, within SO4718at 4922.854 kb on - strand, within SO4718at 4922.875 kb on - strand, within SO4718at 4923.007 kb on - strand, within SO4718at 4923.041 kb on + strand, within SO4718at 4923.105 kb on + strand, within SO4718at 4923.105 kb on + strand, within SO4718at 4923.113 kb on - strand, within SO4718at 4923.113 kb on - strand, within SO4718at 4923.113 kb on - strand, within SO4718at 4923.113 kb on - strand, within SO4718at 4923.306 kb on - strand, within SO4718at 4923.349 kb on - strand, within SO4718at 4923.376 kb on - strand, within SO4718at 4923.474 kb on + strand, within SO4718at 4923.484 kb on + strand, within SO4718at 4923.492 kb on - strand, within SO4718at 4923.492 kb on - strand, within SO4718at 4923.517 kb on + strand, within SO4718at 4923.522 kb on - strand, within SO4718at 4923.522 kb on - strand, within SO4718

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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4,919,401 - SO4715 0.75 -0.5
4,919,412 + SO4715 0.77 +0.2
4,919,412 + SO4715 0.77 -1.0
4,919,412 + SO4715 0.77 +0.2
4,919,412 + SO4715 0.77 +0.1
4,919,420 - SO4715 0.78 +0.0
4,919,420 - SO4715 0.78 -0.3
4,919,420 - SO4715 0.78 -0.6
4,919,420 - SO4715 0.78 -0.4
4,919,420 - SO4715 0.78 -0.2
4,919,420 - SO4715 0.78 -0.7
4,919,420 - SO4715 0.78 +0.1
4,919,420 - SO4715 0.78 -0.6
4,919,457 + SO4715 0.83 +0.2
4,919,465 - SO4715 0.85 +0.3
4,919,465 - SO4715 0.85 +0.3
4,919,480 + SO4715 0.87 +0.5
4,919,488 - SO4715 0.88 -0.0
4,919,623 + -0.4
4,919,696 + +0.2
4,919,703 + -0.2
4,919,703 + +0.2
4,919,724 + SO4716 0.12 +0.8
4,919,767 + SO4716 0.22 -1.7
4,919,798 + SO4716 0.28 -0.5
4,919,929 - SO4716 0.56 -0.4
4,919,933 + SO4716 0.57 -0.2
4,919,941 - SO4716 0.59 +0.4
4,920,072 - SO4716 0.87 +0.6
4,920,083 + SO4716 0.89 -0.1
4,920,523 - +0.5
4,920,630 + SO4717 0.11 -0.3
4,920,630 + SO4717 0.11 -0.2
4,920,638 + SO4717 0.11 +0.0
4,920,691 - SO4717 0.14 -0.7
4,920,697 + SO4717 0.14 +0.3
4,920,754 + SO4717 0.17 +0.7
4,920,762 - SO4717 0.17 -0.1
4,920,802 - SO4717 0.19 -0.3
4,920,802 - SO4717 0.19 -0.2
4,920,838 - SO4717 0.21 -0.0
4,920,918 + SO4717 0.25 +1.9
4,920,926 - SO4717 0.25 -0.3
4,920,926 - SO4717 0.25 +0.0
4,920,941 + SO4717 0.26 +0.3
4,921,036 + SO4717 0.30 -0.9
4,921,044 - SO4717 0.30 -0.0
4,921,074 - SO4717 0.32 -0.1
4,921,151 - SO4717 0.35 +0.7
4,921,179 + SO4717 0.37 +0.5
4,921,179 + SO4717 0.37 -0.3
4,921,207 - SO4717 0.38 +0.2
4,921,213 + SO4717 0.38 +0.6
4,921,221 - SO4717 0.39 +0.2
4,921,221 - SO4717 0.39 -1.1
4,921,221 - SO4717 0.39 +0.4
4,921,249 + SO4717 0.40 +0.5
4,921,268 - SO4717 0.41 +0.3
4,921,268 - SO4717 0.41 +0.9
4,921,268 - SO4717 0.41 +0.8
4,921,389 + SO4717 0.47 +0.4
4,921,397 - SO4717 0.47 +0.5
4,921,397 - SO4717 0.47 +0.7
4,921,438 - SO4717 0.49 -1.4
4,921,478 + SO4717 0.51 -0.1
4,921,478 + SO4717 0.51 -0.7
4,921,478 + SO4717 0.51 +1.0
4,921,478 + SO4717 0.51 -0.0
4,921,486 - SO4717 0.51 +0.6
4,921,638 + SO4717 0.58 -0.2
4,921,663 - SO4717 0.60 +0.2
4,921,800 - SO4717 0.66 -1.4
4,921,873 + SO4717 0.69 -0.4
4,921,919 + SO4717 0.72 -0.4
4,921,930 + SO4717 0.72 +0.4
4,921,938 - +1.8
4,921,940 + SO4717 0.73 +0.2
4,922,062 - SO4717 0.78 +0.4
4,922,068 + SO4717 0.79 +1.2
4,922,068 + SO4717 0.79 -0.2
4,922,076 - SO4717 0.79 -1.9
4,922,076 - SO4717 0.79 +0.6
4,922,076 - SO4717 0.79 +0.5
4,922,078 + SO4717 0.79 -0.2
4,922,142 + SO4717 0.82 +0.2
4,922,150 - SO4717 0.82 -0.2
4,922,150 - SO4717 0.82 -0.4
4,922,199 - SO4717 0.85 +0.9
4,922,214 - SO4717 0.85 +0.9
4,922,271 - SO4717 0.88 +0.5
4,922,276 + SO4717 0.88 -0.1
4,922,324 + -0.0
4,922,547 + +0.2
4,922,600 + +0.3
4,922,600 + +1.1
4,922,608 - +0.2
4,922,608 - +1.7
4,922,718 + SO4718 0.14 +0.6
4,922,726 - SO4718 0.15 +1.6
4,922,761 + SO4718 0.17 -0.1
4,922,784 - SO4718 0.19 +0.2
4,922,846 + SO4718 0.23 +1.0
4,922,847 + SO4718 0.23 +1.1
4,922,854 - SO4718 0.24 +0.4
4,922,875 - SO4718 0.25 +0.2
4,923,007 - SO4718 0.35 +0.5
4,923,041 + SO4718 0.37 -0.2
4,923,105 + SO4718 0.42 -1.4
4,923,105 + SO4718 0.42 -0.4
4,923,113 - SO4718 0.43 -0.4
4,923,113 - SO4718 0.43 +0.3
4,923,113 - SO4718 0.43 +0.3
4,923,113 - SO4718 0.43 -0.1
4,923,306 - SO4718 0.56 -0.3
4,923,349 - SO4718 0.60 +0.2
4,923,376 - SO4718 0.62 +0.5
4,923,474 + SO4718 0.69 +0.2
4,923,484 + SO4718 0.69 +0.4
4,923,492 - SO4718 0.70 -0.4
4,923,492 - SO4718 0.70 -1.3
4,923,517 + SO4718 0.72 +0.5
4,923,522 - SO4718 0.72 -0.2
4,923,522 - SO4718 0.72 +0.2

Or see this region's nucleotide sequence