Experiment: 1-ethyl-3-methylimidazolium chloride 80 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0157 and SO0159 are separated by 476 nucleotides SO0159 and SO0160 are separated by 164 nucleotides SO0160 and pckA are separated by 253 nucleotides
SO0157: SO0157 - proton/glutamate symporter (NCBI ptt file), at 164,022 to 165,260
SO0157
SO0159: SO0159 - hypothetical protein (NCBI ptt file), at 165,737 to 166,093
SO0159
SO0160: SO0160 - transporter, putative (NCBI ptt file), at 166,258 to 167,817
SO0160
SO0162: pckA - phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file), at 168,071 to 169,612
pckA
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 165.346 kb on - strand at 165.346 kb on - strand at 165.462 kb on - strand at 165.512 kb on + strand at 165.576 kb on + strand at 165.576 kb on + strand at 165.578 kb on + strand at 165.578 kb on + strand at 165.584 kb on - strand at 165.584 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.586 kb on - strand at 165.618 kb on + strand at 165.626 kb on - strand at 165.627 kb on + strand at 165.635 kb on + strand at 165.635 kb on - strand at 165.669 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.670 kb on + strand at 165.678 kb on - strand at 165.678 kb on - strand at 165.692 kb on - strand at 165.778 kb on + strand, within SO0159 at 165.778 kb on + strand, within SO0159 at 165.778 kb on - strand, within SO0159 at 165.783 kb on + strand, within SO0159 at 165.938 kb on + strand, within SO0159 at 165.938 kb on + strand, within SO0159 at 166.027 kb on - strand, within SO0159 at 166.040 kb on - strand, within SO0159 at 166.050 kb on - strand, within SO0159 at 166.160 kb on + strand at 166.188 kb on + strand at 166.190 kb on + strand at 166.190 kb on + strand at 166.190 kb on + strand at 166.198 kb on - strand at 166.198 kb on - strand at 166.254 kb on - strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.256 kb on + strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.264 kb on - strand at 166.294 kb on + strand at 166.314 kb on - strand at 166.337 kb on + strand at 166.355 kb on - strand at 166.460 kb on - strand, within SO0160 at 166.538 kb on - strand, within SO0160 at 166.545 kb on + strand, within SO0160 at 166.545 kb on + strand, within SO0160 at 166.600 kb on + strand, within SO0160 at 166.600 kb on + strand, within SO0160 at 166.632 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.640 kb on + strand, within SO0160 at 166.648 kb on - strand, within SO0160 at 166.658 kb on - strand, within SO0160 at 166.686 kb on + strand, within SO0160 at 166.694 kb on - strand, within SO0160 at 166.756 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.834 kb on + strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.842 kb on - strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.891 kb on + strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.899 kb on - strand, within SO0160 at 166.943 kb on + strand, within SO0160 at 166.945 kb on + strand, within SO0160 at 166.960 kb on + strand, within SO0160 at 167.024 kb on + strand, within SO0160 at 167.037 kb on + strand, within SO0160 at 167.045 kb on - strand, within SO0160 at 167.047 kb on + strand, within SO0160 at 167.048 kb on - strand, within SO0160 at 167.048 kb on - strand, within SO0160 at 167.081 kb on + strand, within SO0160 at 167.189 kb on - strand, within SO0160 at 167.330 kb on + strand, within SO0160 at 167.333 kb on + strand, within SO0160 at 167.388 kb on - strand, within SO0160 at 167.394 kb on - strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.446 kb on + strand, within SO0160 at 167.462 kb on - strand, within SO0160 at 167.494 kb on + strand, within SO0160 at 167.508 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.530 kb on - strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.549 kb on - strand, within SO0160 at 167.549 kb on - strand, within SO0160 at 167.604 kb on - strand, within SO0160 at 167.655 kb on + strand, within SO0160 at 167.656 kb on + strand, within SO0160 at 167.663 kb on - strand at 167.663 kb on - strand at 167.663 kb on - strand at 167.686 kb on + strand at 167.693 kb on + strand at 167.701 kb on - strand at 167.701 kb on - strand at 167.704 kb on + strand at 167.756 kb on - strand at 167.760 kb on + strand at 167.760 kb on + strand at 167.769 kb on - strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.779 kb on - strand at 167.779 kb on - strand at 167.813 kb on + strand at 167.813 kb on + strand at 167.813 kb on + strand at 167.821 kb on + strand at 167.821 kb on - strand at 167.826 kb on - strand at 167.880 kb on - strand at 167.951 kb on - strand at 167.958 kb on + strand at 167.964 kb on + strand at 167.964 kb on + strand at 167.964 kb on + strand at 167.965 kb on + strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.973 kb on - strand at 167.987 kb on - strand at 168.075 kb on + strand at 168.076 kb on + strand at 168.077 kb on + strand at 168.077 kb on - strand at 168.085 kb on - strand at 168.087 kb on + strand at 168.116 kb on - strand at 168.172 kb on + strand at 168.174 kb on + strand at 168.175 kb on - strand at 168.183 kb on + strand at 168.203 kb on + strand at 168.247 kb on + strand, within pckA at 168.248 kb on + strand, within pckA at 168.255 kb on - strand, within pckA at 168.255 kb on - strand, within pckA at 168.255 kb on - strand, within pckA at 168.299 kb on - strand, within pckA at 168.311 kb on - strand, within pckA at 168.432 kb on + strand, within pckA at 168.601 kb on - strand, within pckA at 168.660 kb on + strand, within pckA at 168.660 kb on + strand, within pckA at 168.660 kb on + strand, within pckA at 168.685 kb on - strand, within pckA at 168.770 kb on - strand, within pckA at 168.774 kb on + strand, within pckA at 168.782 kb on - strand, within pckA
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 80 mM remove 165,346 - -0.5 165,346 - -0.1 165,462 - +0.3 165,512 + +0.4 165,576 + +0.1 165,576 + -0.0 165,578 + -0.4 165,578 + -0.2 165,584 - -0.0 165,584 - -0.2 165,586 - +0.2 165,586 - -0.6 165,586 - +0.4 165,586 - +0.1 165,618 + -0.0 165,626 - +0.0 165,627 + -0.4 165,635 + +1.1 165,635 - -0.8 165,669 + +0.1 165,670 + -0.4 165,670 + -0.1 165,670 + +0.5 165,670 + +0.2 165,670 + -0.3 165,678 - +0.1 165,678 - -0.2 165,692 - +0.3 165,778 + SO0159 0.11 -0.2 165,778 + SO0159 0.11 +0.1 165,778 - SO0159 0.11 +0.0 165,783 + SO0159 0.13 -0.3 165,938 + SO0159 0.56 -0.4 165,938 + SO0159 0.56 -0.4 166,027 - SO0159 0.81 +0.2 166,040 - SO0159 0.85 +0.3 166,050 - SO0159 0.88 +1.0 166,160 + -0.2 166,188 + -0.8 166,190 + +0.9 166,190 + +0.6 166,190 + +0.9 166,198 - +0.5 166,198 - +0.4 166,254 - +0.3 166,256 + +0.0 166,256 + +0.1 166,256 + +0.2 166,256 + +0.1 166,256 + +0.7 166,256 + +0.3 166,256 + +0.0 166,256 + -0.2 166,256 + -0.0 166,256 + +0.3 166,264 - +0.7 166,264 - +0.1 166,264 - +0.1 166,264 - +0.2 166,264 - -0.3 166,264 - +0.4 166,264 - -0.0 166,264 - +1.2 166,264 - -0.3 166,264 - +0.4 166,264 - -0.2 166,264 - +0.3 166,264 - -0.1 166,264 - +0.3 166,294 + +1.2 166,314 - -0.1 166,337 + +0.3 166,355 - -0.3 166,460 - SO0160 0.13 -0.3 166,538 - SO0160 0.18 -0.2 166,545 + SO0160 0.18 +1.2 166,545 + SO0160 0.18 -0.4 166,600 + SO0160 0.22 +0.5 166,600 + SO0160 0.22 -0.3 166,632 + SO0160 0.24 -0.0 166,640 + SO0160 0.24 +0.4 166,640 + SO0160 0.24 +1.0 166,640 + SO0160 0.24 -0.2 166,640 + SO0160 0.24 +0.3 166,648 - SO0160 0.25 +0.2 166,658 - SO0160 0.26 -0.4 166,686 + SO0160 0.27 +0.3 166,694 - SO0160 0.28 -0.1 166,756 + SO0160 0.32 +0.0 166,834 + SO0160 0.37 -0.1 166,834 + SO0160 0.37 +0.0 166,834 + SO0160 0.37 +0.5 166,834 + SO0160 0.37 +1.7 166,834 + SO0160 0.37 -2.2 166,842 - SO0160 0.37 -0.9 166,842 - SO0160 0.37 +1.1 166,842 - SO0160 0.37 -0.1 166,842 - SO0160 0.37 +0.1 166,842 - SO0160 0.37 +0.3 166,842 - SO0160 0.37 -0.2 166,842 - SO0160 0.37 +0.5 166,842 - SO0160 0.37 +0.3 166,842 - SO0160 0.37 +0.3 166,842 - SO0160 0.37 -0.2 166,891 + SO0160 0.41 +0.4 166,891 + SO0160 0.41 -0.1 166,891 + SO0160 0.41 +0.4 166,891 + SO0160 0.41 +1.4 166,891 + SO0160 0.41 +0.1 166,891 + SO0160 0.41 +1.0 166,891 + SO0160 0.41 -0.4 166,891 + SO0160 0.41 +0.1 166,891 + SO0160 0.41 -0.1 166,899 - SO0160 0.41 +0.3 166,899 - SO0160 0.41 +0.8 166,899 - SO0160 0.41 -0.4 166,899 - SO0160 0.41 -0.3 166,899 - SO0160 0.41 -0.4 166,943 + SO0160 0.44 +0.9 166,945 + SO0160 0.44 -0.5 166,960 + SO0160 0.45 +0.1 167,024 + SO0160 0.49 +0.2 167,037 + SO0160 0.50 +0.2 167,045 - SO0160 0.50 -0.0 167,047 + SO0160 0.51 -0.7 167,048 - SO0160 0.51 +0.0 167,048 - SO0160 0.51 +0.1 167,081 + SO0160 0.53 -0.2 167,189 - SO0160 0.60 +0.3 167,330 + SO0160 0.69 -0.6 167,333 + SO0160 0.69 -0.7 167,388 - SO0160 0.72 -0.3 167,394 - SO0160 0.73 +0.1 167,436 + SO0160 0.76 -0.6 167,436 + SO0160 0.76 +0.3 167,436 + SO0160 0.76 -0.2 167,436 + SO0160 0.76 -0.5 167,436 + SO0160 0.76 +0.7 167,436 + SO0160 0.76 +0.0 167,436 + SO0160 0.76 -0.2 167,436 + SO0160 0.76 +0.0 167,436 + SO0160 0.76 +0.1 167,436 + SO0160 0.76 +0.4 167,436 + SO0160 0.76 +0.4 167,436 + SO0160 0.76 +0.6 167,436 + SO0160 0.76 +0.3 167,436 + SO0160 0.76 -0.3 167,436 + SO0160 0.76 -0.1 167,444 - SO0160 0.76 +0.1 167,444 - SO0160 0.76 +0.3 167,444 - SO0160 0.76 +0.9 167,444 - SO0160 0.76 -0.0 167,444 - SO0160 0.76 -0.1 167,444 - SO0160 0.76 +1.1 167,444 - SO0160 0.76 -0.3 167,444 - SO0160 0.76 +0.4 167,444 - SO0160 0.76 +0.3 167,444 - SO0160 0.76 +0.4 167,444 - SO0160 0.76 +0.1 167,444 - SO0160 0.76 -0.2 167,444 - SO0160 0.76 -0.0 167,444 - SO0160 0.76 +0.2 167,444 - SO0160 0.76 -1.1 167,444 - SO0160 0.76 +0.9 167,444 - SO0160 0.76 -0.5 167,446 + SO0160 0.76 -0.6 167,462 - SO0160 0.77 +1.1 167,494 + SO0160 0.79 +0.8 167,508 + SO0160 0.80 -0.1 167,517 + SO0160 0.81 +0.4 167,517 + SO0160 0.81 +0.3 167,517 + SO0160 0.81 -0.5 167,517 + SO0160 0.81 -0.0 167,517 + SO0160 0.81 +0.1 167,517 + SO0160 0.81 +0.7 167,517 + SO0160 0.81 -0.4 167,517 + SO0160 0.81 +0.2 167,517 + SO0160 0.81 +0.2 167,517 + SO0160 0.81 +0.6 167,517 + SO0160 0.81 +0.7 167,525 - SO0160 0.81 +0.3 167,525 - SO0160 0.81 +0.2 167,525 - SO0160 0.81 -0.4 167,525 - SO0160 0.81 +0.4 167,525 - SO0160 0.81 +0.6 167,525 - SO0160 0.81 +0.1 167,525 - SO0160 0.81 -0.0 167,525 - SO0160 0.81 -0.1 167,525 - SO0160 0.81 +0.2 167,525 - SO0160 0.81 -0.1 167,525 - SO0160 0.81 +0.1 167,530 - SO0160 0.82 +0.0 167,541 + SO0160 0.82 +1.1 167,541 + SO0160 0.82 +0.6 167,541 + SO0160 0.82 +0.6 167,549 - SO0160 0.83 +1.2 167,549 - SO0160 0.83 -1.0 167,604 - SO0160 0.86 +0.1 167,655 + SO0160 0.90 +0.7 167,656 + SO0160 0.90 -0.4 167,663 - -0.6 167,663 - +0.4 167,663 - +0.6 167,686 + +0.1 167,693 + -1.4 167,701 - +0.1 167,701 - -0.2 167,704 + +0.3 167,756 - -0.1 167,760 + -3.0 167,760 + +0.6 167,769 - +0.3 167,771 + -0.0 167,771 + +0.1 167,771 + -0.4 167,771 + +0.0 167,779 - +0.4 167,779 - -0.3 167,813 + +0.9 167,813 + -0.3 167,813 + +0.2 167,821 + -0.0 167,821 - -0.4 167,826 - -0.9 167,880 - +0.3 167,951 - +0.3 167,958 + -0.1 167,964 + -2.3 167,964 + +0.2 167,964 + +0.4 167,965 + +0.5 167,972 - -0.3 167,972 - +1.3 167,972 - +0.3 167,972 - -0.3 167,972 - -0.9 167,972 - +0.2 167,973 - +0.2 167,987 - -0.2 168,075 + +0.2 168,076 + +0.6 168,077 + +0.2 168,077 - -0.1 168,085 - +0.4 168,087 + +0.2 168,116 - +0.7 168,172 + -0.8 168,174 + +0.9 168,175 - -0.0 168,183 + +0.1 168,203 + +0.5 168,247 + pckA SO0162 0.11 +0.1 168,248 + pckA SO0162 0.11 -0.1 168,255 - pckA SO0162 0.12 +0.3 168,255 - pckA SO0162 0.12 -0.4 168,255 - pckA SO0162 0.12 -0.6 168,299 - pckA SO0162 0.15 -0.5 168,311 - pckA SO0162 0.16 +0.3 168,432 + pckA SO0162 0.23 -0.0 168,601 - pckA SO0162 0.34 -0.1 168,660 + pckA SO0162 0.38 +0.3 168,660 + pckA SO0162 0.38 -1.5 168,660 + pckA SO0162 0.38 -0.5 168,685 - pckA SO0162 0.40 +0.2 168,770 - pckA SO0162 0.45 -0.4 168,774 + pckA SO0162 0.46 -0.1 168,782 - pckA SO0162 0.46 +0.4
Or see this region's nucleotide sequence