Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO1396 and SO1397 overlap by 20 nucleotides SO1397 and SO1398 are separated by 133 nucleotides SO1398 and SO1399 are separated by 69 nucleotides SO1399 and SO1400 are separated by 271 nucleotides
SO1396: SO1396 - conserved hypothetical protein (NCBI ptt file), at 1,452,650 to 1,453,849
SO1396
SO1397: SO1397 - cytosine deaminase (NCBI ptt file), at 1,453,830 to 1,454,267
SO1397
SO1398: SO1398 - hypothetical protein (NCBI ptt file), at 1,454,401 to 1,454,493
SO1398
SO1399: SO1399 - conserved hypothetical protein (NCBI ptt file), at 1,454,563 to 1,454,892
SO1399
SO1400: SO1400 - conserved hypothetical protein (NCBI ptt file), at 1,455,164 to 1,456,042
SO1400
Position (kb) 1454
1455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1453.679 kb on + strand, within SO1396 at 1453.729 kb on - strand, within SO1396 at 1453.800 kb on + strand at 1453.812 kb on - strand at 1453.812 kb on - strand at 1453.812 kb on - strand at 1453.892 kb on - strand, within SO1397 at 1453.922 kb on + strand, within SO1397 at 1453.922 kb on + strand, within SO1397 at 1453.935 kb on + strand, within SO1397 at 1454.044 kb on + strand, within SO1397 at 1454.044 kb on + strand, within SO1397 at 1454.044 kb on + strand, within SO1397 at 1454.044 kb on + strand, within SO1397 at 1454.050 kb on - strand, within SO1397 at 1454.052 kb on - strand, within SO1397 at 1454.123 kb on + strand, within SO1397 at 1454.133 kb on + strand, within SO1397 at 1454.133 kb on + strand, within SO1397 at 1454.141 kb on - strand, within SO1397 at 1454.141 kb on - strand, within SO1397 at 1454.154 kb on - strand, within SO1397 at 1454.298 kb on + strand at 1454.304 kb on - strand at 1454.306 kb on - strand at 1454.306 kb on - strand at 1454.306 kb on - strand at 1454.315 kb on - strand at 1454.503 kb on + strand at 1454.511 kb on + strand at 1454.516 kb on + strand at 1454.573 kb on + strand at 1454.614 kb on - strand, within SO1399 at 1454.761 kb on - strand, within SO1399 at 1454.885 kb on + strand at 1454.900 kb on - strand at 1454.948 kb on - strand at 1455.055 kb on + strand at 1455.204 kb on + strand at 1455.235 kb on - strand at 1455.246 kb on + strand at 1455.246 kb on + strand at 1455.254 kb on - strand, within SO1400 at 1455.268 kb on + strand, within SO1400 at 1455.314 kb on - strand, within SO1400 at 1455.365 kb on + strand, within SO1400 at 1455.417 kb on - strand, within SO1400 at 1455.483 kb on + strand, within SO1400 at 1455.732 kb on + strand, within SO1400 at 1455.862 kb on + strand, within SO1400 at 1455.863 kb on + strand, within SO1400 at 1455.863 kb on + strand, within SO1400 at 1455.877 kb on + strand, within SO1400 at 1455.885 kb on - strand, within SO1400
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM remove 1,453,679 + SO1396 0.86 -0.2 1,453,729 - SO1396 0.90 -1.3 1,453,800 + +1.1 1,453,812 - +1.5 1,453,812 - +0.6 1,453,812 - -0.4 1,453,892 - SO1397 0.14 -0.9 1,453,922 + SO1397 0.21 -0.1 1,453,922 + SO1397 0.21 -2.1 1,453,935 + SO1397 0.24 -0.7 1,454,044 + SO1397 0.49 +0.1 1,454,044 + SO1397 0.49 +0.5 1,454,044 + SO1397 0.49 -0.6 1,454,044 + SO1397 0.49 +0.2 1,454,050 - SO1397 0.50 +0.0 1,454,052 - SO1397 0.51 +0.0 1,454,123 + SO1397 0.67 -0.2 1,454,133 + SO1397 0.69 +0.2 1,454,133 + SO1397 0.69 -0.3 1,454,141 - SO1397 0.71 -0.6 1,454,141 - SO1397 0.71 -0.2 1,454,154 - SO1397 0.74 +0.3 1,454,298 + +0.2 1,454,304 - +2.1 1,454,306 - +0.9 1,454,306 - -0.2 1,454,306 - -0.4 1,454,315 - +0.3 1,454,503 + -0.5 1,454,511 + -0.2 1,454,516 + -0.1 1,454,573 + -0.3 1,454,614 - SO1399 0.15 -0.2 1,454,761 - SO1399 0.60 +1.3 1,454,885 + +1.3 1,454,900 - +0.4 1,454,948 - -1.0 1,455,055 + -0.4 1,455,204 + +1.4 1,455,235 - +1.2 1,455,246 + +1.3 1,455,246 + +1.0 1,455,254 - SO1400 0.10 +1.0 1,455,268 + SO1400 0.12 +2.3 1,455,314 - SO1400 0.17 +1.6 1,455,365 + SO1400 0.23 +0.8 1,455,417 - SO1400 0.29 +1.7 1,455,483 + SO1400 0.36 +0.4 1,455,732 + SO1400 0.65 +0.4 1,455,862 + SO1400 0.79 +2.2 1,455,863 + SO1400 0.80 +2.0 1,455,863 + SO1400 0.80 +0.3 1,455,877 + SO1400 0.81 +1.0 1,455,885 - SO1400 0.82 +1.5
Or see this region's nucleotide sequence