Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3258 and tRNA-Arg-9 are separated by 55 nucleotides tRNA-Arg-9 and SO3259 are separated by 47 nucleotides
SO3258: SO3258 - conserved hypothetical protein (NCBI ptt file), at 3,393,912 to 3,395,087
SO3258
SO_t078: tRNA-Arg-9 - tRNA-Arg (RefSeq), at 3,395,143 to 3,395,218
tRNA-Arg-9
SO3259: SO3259 - conserved domain protein (NCBI ptt file), at 3,395,266 to 3,396,591
SO3259
Position (kb) 3395
3396 Strain fitness (log2 ratio) -1
0
1 at 3394.150 kb on + strand, within SO3258 at 3394.244 kb on + strand, within SO3258 at 3394.245 kb on - strand, within SO3258 at 3394.283 kb on + strand, within SO3258 at 3394.283 kb on + strand, within SO3258 at 3394.311 kb on + strand, within SO3258 at 3394.332 kb on + strand, within SO3258 at 3394.332 kb on + strand, within SO3258 at 3394.340 kb on - strand, within SO3258 at 3394.340 kb on - strand, within SO3258 at 3394.340 kb on - strand, within SO3258 at 3394.340 kb on - strand, within SO3258 at 3394.424 kb on - strand, within SO3258 at 3394.445 kb on + strand, within SO3258 at 3394.495 kb on - strand, within SO3258 at 3394.561 kb on + strand, within SO3258 at 3394.571 kb on + strand, within SO3258 at 3394.664 kb on + strand, within SO3258 at 3394.667 kb on - strand, within SO3258 at 3394.717 kb on - strand, within SO3258 at 3394.747 kb on + strand, within SO3258 at 3394.836 kb on + strand, within SO3258 at 3394.844 kb on - strand, within SO3258 at 3394.892 kb on - strand, within SO3258 at 3395.012 kb on + strand at 3395.054 kb on - strand at 3395.160 kb on + strand, within tRNA-Arg-9 at 3395.160 kb on + strand, within tRNA-Arg-9 at 3395.168 kb on - strand, within tRNA-Arg-9 at 3395.168 kb on - strand, within tRNA-Arg-9 at 3395.168 kb on - strand, within tRNA-Arg-9 at 3395.371 kb on + strand at 3395.371 kb on + strand at 3395.379 kb on - strand at 3395.412 kb on + strand, within SO3259 at 3395.503 kb on + strand, within SO3259 at 3395.668 kb on - strand, within SO3259 at 3395.832 kb on - strand, within SO3259 at 3395.911 kb on - strand, within SO3259 at 3395.911 kb on - strand, within SO3259 at 3395.911 kb on - strand, within SO3259 at 3395.959 kb on - strand, within SO3259 at 3395.993 kb on - strand, within SO3259 at 3396.018 kb on + strand, within SO3259 at 3396.018 kb on + strand, within SO3259 at 3396.026 kb on - strand, within SO3259 at 3396.026 kb on - strand, within SO3259 at 3396.130 kb on + strand, within SO3259 at 3396.130 kb on + strand, within SO3259 at 3396.130 kb on + strand, within SO3259 at 3396.130 kb on + strand, within SO3259 at 3396.138 kb on - strand, within SO3259 at 3396.138 kb on - strand, within SO3259 at 3396.138 kb on - strand, within SO3259 at 3396.138 kb on - strand, within SO3259 at 3396.138 kb on - strand, within SO3259 at 3396.212 kb on + strand, within SO3259
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,394,150 + SO3258 0.20 +0.5 3,394,244 + SO3258 0.28 +0.2 3,394,245 - SO3258 0.28 +0.2 3,394,283 + SO3258 0.32 -0.2 3,394,283 + SO3258 0.32 +0.3 3,394,311 + SO3258 0.34 -0.8 3,394,332 + SO3258 0.36 -0.2 3,394,332 + SO3258 0.36 +0.2 3,394,340 - SO3258 0.36 +0.2 3,394,340 - SO3258 0.36 -0.0 3,394,340 - SO3258 0.36 -0.4 3,394,340 - SO3258 0.36 +0.5 3,394,424 - SO3258 0.44 -0.6 3,394,445 + SO3258 0.45 +0.4 3,394,495 - SO3258 0.50 -0.0 3,394,561 + SO3258 0.55 +0.0 3,394,571 + SO3258 0.56 +0.9 3,394,664 + SO3258 0.64 +0.3 3,394,667 - SO3258 0.64 -0.1 3,394,717 - SO3258 0.68 +0.4 3,394,747 + SO3258 0.71 +0.5 3,394,836 + SO3258 0.79 -0.1 3,394,844 - SO3258 0.79 +0.2 3,394,892 - SO3258 0.83 +0.3 3,395,012 + -0.1 3,395,054 - -0.8 3,395,160 + tRNA-Arg-9 SO_t078 0.22 +1.0 3,395,160 + tRNA-Arg-9 SO_t078 0.22 -0.8 3,395,168 - tRNA-Arg-9 SO_t078 0.33 -0.6 3,395,168 - tRNA-Arg-9 SO_t078 0.33 -0.8 3,395,168 - tRNA-Arg-9 SO_t078 0.33 +0.2 3,395,371 + +0.0 3,395,371 + -0.2 3,395,379 - +0.4 3,395,412 + SO3259 0.11 +0.5 3,395,503 + SO3259 0.18 -0.2 3,395,668 - SO3259 0.30 +0.8 3,395,832 - SO3259 0.43 +0.1 3,395,911 - SO3259 0.49 -0.4 3,395,911 - SO3259 0.49 -1.0 3,395,911 - SO3259 0.49 +0.4 3,395,959 - SO3259 0.52 +0.1 3,395,993 - SO3259 0.55 -0.2 3,396,018 + SO3259 0.57 -0.1 3,396,018 + SO3259 0.57 +0.4 3,396,026 - SO3259 0.57 -0.4 3,396,026 - SO3259 0.57 +0.4 3,396,130 + SO3259 0.65 +1.7 3,396,130 + SO3259 0.65 -0.1 3,396,130 + SO3259 0.65 +0.5 3,396,130 + SO3259 0.65 +0.2 3,396,138 - SO3259 0.66 -0.7 3,396,138 - SO3259 0.66 +0.4 3,396,138 - SO3259 0.66 -0.3 3,396,138 - SO3259 0.66 -0.1 3,396,138 - SO3259 0.66 +0.1 3,396,212 + SO3259 0.71 +0.2
Or see this region's nucleotide sequence