Strain Fitness in Shewanella oneidensis MR-1 around SO4693

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,893,659	-		SO4692	0.70	-0.5
4,893,804	-		SO4692	0.74	-0.8
4,893,806	-		SO4692	0.74	-1.7
4,893,806	-		SO4692	0.74	-0.6
4,893,878	+		SO4692	0.77	+0.5
4,893,878	+		SO4692	0.77	-0.4
4,893,878	+		SO4692	0.77	-0.7
4,893,886	-		SO4692	0.77	+2.1
4,893,886	-		SO4692	0.77	-0.0
4,894,004	+		SO4692	0.81	+0.4
4,894,012	-		SO4692	0.81	+0.4
4,894,012	-		SO4692	0.81	-2.7
4,894,034	+		SO4692	0.82	-0.4
4,894,103	+		SO4692	0.84	-0.2
4,894,149	+		SO4692	0.85	-0.4
4,894,299	-				-1.0
4,894,340	-				-0.6
4,894,378	+				-0.5
4,894,434	-				-0.9
4,894,442	-				+0.2
4,894,466	+				-1.4
4,894,470	-				-1.4
4,894,474	-				-0.2
4,894,479	-				-0.7
4,894,501	-				+0.1
4,894,617	+				-0.7
4,894,620	-				-0.2
4,894,625	-				-0.2
4,894,625	-				-0.6
4,894,625	-				+0.4
4,894,698	+				-0.4
4,894,708	-				-0.6
4,894,718	+				-0.3
4,894,726	-				-0.4
4,894,726	-				-0.9
4,894,751	+		SO4693	0.11	-0.2
4,894,751	+		SO4693	0.11	-0.3
4,894,759	-		SO4693	0.12	-0.6
4,894,821	-		SO4693	0.17	-0.6
4,894,821	-		SO4693	0.17	+0.1
4,894,896	+		SO4693	0.24	-0.7
4,894,898	+		SO4693	0.24	+0.8
4,894,921	-		SO4693	0.26	-0.4
4,895,011	-		SO4693	0.34	-0.6
4,895,166	+		SO4693	0.48	-1.0
4,895,237	+		SO4693	0.54	-3.2
4,895,246	-		SO4693	0.54	-1.9
4,895,263	-		SO4693	0.56	-0.7
4,895,305	-		SO4693	0.60	-0.4
4,895,395	+		SO4693	0.67	-0.8
4,895,395	+		SO4693	0.67	-0.3
4,895,395	+		SO4693	0.67	-0.7
4,895,403	-		SO4693	0.68	-0.4
4,895,403	-		SO4693	0.68	-0.6
4,895,412	+		SO4693	0.69	-0.4
4,895,487	-		SO4693	0.75	-1.2
4,895,528	-		SO4693	0.79	-0.9
4,895,592	+		SO4693	0.85	-0.8
4,895,629	-		SO4693	0.88	-0.8
4,895,654	+				+0.2
4,895,662	-				-0.2
4,895,664	+				-0.8
4,895,664	-				-0.6
4,895,689	+				-0.7
4,895,689	+				-1.2
4,895,689	+				-1.6
4,895,697	-				+0.2
4,895,758	-				-0.4
4,895,758	-				+1.1
4,895,774	-				-0.8
4,895,806	+				-0.2
4,895,814	-				+0.2
4,895,814	-				-0.2
4,895,814	-				-0.2
4,895,877	-				+0.0
4,895,937	-				+0.1
4,895,947	-				-0.2
4,895,955	+				-0.4
4,895,985	+				-2.1
4,895,995	-				-1.2
4,896,001	+				-1.8
4,896,009	-				+0.2
4,896,164	+				-0.3
4,896,206	+				-0.2
4,896,239	+				+0.5
4,896,247	-				-1.9
4,896,316	-				-0.2
4,896,316	-				-0.2
4,896,316	-				-0.5
4,896,419	+				-0.3
4,896,454	+				+0.4
4,896,454	+				-0.8
4,896,455	+				-1.0
4,896,455	+				-0.6
4,896,462	-				+0.5
4,896,462	-				-0.6
4,896,500	+				+0.2
4,896,508	-				-0.1
4,896,599	-				+2.7
4,896,602	+				+0.2
4,896,610	-		SO4694	0.10	-0.0
4,896,624	-		SO4694	0.12	+0.2
4,896,660	+		SO4694	0.17	-0.1
4,896,680	+		SO4694	0.20	+0.2
4,896,710	+		SO4694	0.24	-1.9
4,896,710	+		SO4694	0.24	+0.1
4,896,718	-		SO4694	0.25	+0.5
4,896,719	+		SO4694	0.25	-0.0