Strain Fitness in Shewanella oneidensis MR-1 around SO3914

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,058,037	+				+0.5
4,058,084	-				-0.7
4,058,084	-				+0.2
4,058,086	-				+0.6
4,058,097	+				-0.2
4,058,132	-				+0.1
4,058,142	+				+0.4
4,058,266	+		SO3913	0.18	-0.8
4,058,278	+		SO3913	0.20	-0.5
4,058,344	-		SO3913	0.30	-0.9
4,058,371	+		SO3913	0.34	+0.1
4,058,391	+		SO3913	0.37	-0.8
4,058,391	+		SO3913	0.37	-1.7
4,058,391	+		SO3913	0.37	-2.6
4,058,399	-		SO3913	0.38	-0.8
4,058,399	-		SO3913	0.38	-1.1
4,058,576	+		SO3913	0.64	-1.4
4,058,584	-		SO3913	0.65	-1.2
4,058,598	-		SO3913	0.67	-0.9
4,058,763	+				-1.8
4,058,853	-				+0.7
4,058,856	+				-1.0
4,058,856	+				-1.1
4,058,856	+				-1.4
4,058,856	+				-0.7
4,058,857	+				-1.5
4,058,864	-				-0.9
4,058,864	-				-0.6
4,058,864	-				-1.3
4,058,891	+				-1.4
4,058,891	+				-0.5
4,058,899	-				-1.3
4,058,899	-				-0.8
4,058,899	-				-1.6
4,058,899	-				-0.3
4,058,965	-				-1.2
4,058,965	-				-1.1
4,059,021	-				-0.3
4,059,064	+				-0.5
4,059,088	-				-0.8
4,059,166	-		SO3914	0.12	-0.3
4,059,169	+		SO3914	0.13	-1.7
4,059,196	-		SO3914	0.14	-0.2
4,059,228	-		SO3914	0.15	-0.2
4,059,249	-		SO3914	0.16	-0.8
4,059,292	-		SO3914	0.18	-0.7
4,059,371	-		SO3914	0.22	-0.5
4,059,430	-		SO3914	0.24	-1.9
4,059,513	-		SO3914	0.28	-0.2
4,059,559	+		SO3914	0.30	-0.5
4,059,569	+		SO3914	0.31	-1.5
4,059,569	+		SO3914	0.31	-1.0
4,059,593	+		SO3914	0.32	-1.3
4,059,593	+		SO3914	0.32	-1.0
4,059,593	+		SO3914	0.32	-0.7
4,059,601	-		SO3914	0.32	-0.5
4,059,601	-		SO3914	0.32	-1.2
4,059,660	+		SO3914	0.35	-0.5
4,059,684	-		SO3914	0.36	-0.4
4,059,731	-		SO3914	0.38	-1.2
4,059,811	-		SO3914	0.42	-1.3
4,059,886	+		SO3914	0.45	-1.6
4,059,913	-		SO3914	0.47	-1.6
4,060,061	-		SO3914	0.53	-1.0
4,060,063	-		SO3914	0.53	-0.6
4,060,068	-		SO3914	0.54	-2.0
4,060,112	+		SO3914	0.56	-0.6
4,060,182	-		SO3914	0.59	-1.4
4,060,374	+		SO3914	0.68	-0.6
4,060,382	+		SO3914	0.68	-0.9
4,060,488	+		SO3914	0.73	-2.9
4,060,504	-		SO3914	0.73	-0.2
4,060,587	-		SO3914	0.77	-0.5
4,060,600	+		SO3914	0.78	-1.5
4,060,619	-		SO3914	0.79	-1.2
4,060,619	-		SO3914	0.79	+0.9
4,060,645	+		SO3914	0.80	-0.7
4,060,645	+		SO3914	0.80	-1.6
4,060,731	+		SO3914	0.84	-0.9
4,060,739	-		SO3914	0.84	+0.1
4,060,747	-		SO3914	0.85	-1.9
4,060,780	-		SO3914	0.86	-0.3
4,060,824	-		SO3914	0.88	-0.1
4,060,873	-				-0.6
4,060,931	+				-1.1
4,060,938	+				-1.3
4,061,014	+				-2.1
4,061,450	+				+0.3
4,061,461	+				+0.5
4,061,469	-				-0.6
4,061,532	+				+1.7
4,061,540	-				-0.2
4,061,610	-				-0.1
4,061,612	+				+0.2
4,061,612	+				+0.2
4,061,614	-				-0.4
4,061,620	-				+0.4
4,061,620	-				+0.0
4,061,620	-				-0.2
4,061,627	-				+0.3
4,061,707	+		SO3915	0.14	+0.9
4,061,707	+		SO3915	0.14	+0.2
4,061,707	+		SO3915	0.14	-0.3
4,061,707	+		SO3915	0.14	-0.4
4,061,707	+		SO3915	0.14	-0.1
4,061,715	-		SO3915	0.15	-0.2
4,061,715	-		SO3915	0.15	-0.0
4,061,715	-		SO3915	0.15	-0.5
4,061,715	-		SO3915	0.15	-0.0
4,061,806	-		SO3915	0.35	-0.2
4,062,003	+		SO3915	0.77	-0.2
4,062,011	-		SO3915	0.79	+0.8