Strain Fitness in Shewanella oneidensis MR-1 around SO3779

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,928,326	+				+0.3
3,928,326	+				-0.2
3,928,334	-				-0.2
3,928,361	+				+0.0
3,928,420	+				+0.2
3,928,420	+				-1.1
3,928,428	-				+0.2
3,928,528	+		SO3777	0.34	+0.5
3,928,530	+		SO3777	0.35	+0.4
3,928,564	+		SO3777	0.54	-0.1
3,928,564	+		SO3777	0.54	-1.4
3,928,566	+		SO3777	0.55	-0.4
3,928,572	-		SO3777	0.58	+0.2
3,928,572	-		SO3777	0.58	-1.8
3,928,746	+				-0.0
3,928,853	+		SO3778	0.24	-1.1
3,928,874	+		SO3778	0.28	-1.1
3,928,874	+		SO3778	0.28	-0.1
3,928,882	-		SO3778	0.29	+0.2
3,928,884	+		SO3778	0.29	-0.1
3,928,892	-		SO3778	0.31	-0.8
3,928,892	-		SO3778	0.31	-0.2
3,929,002	-		SO3778	0.49	+0.0
3,929,086	+		SO3778	0.64	+0.0
3,929,086	+		SO3778	0.64	+0.1
3,929,086	+		SO3778	0.64	+1.3
3,929,086	+		SO3778	0.64	-0.4
3,929,094	-		SO3778	0.65	-0.4
3,929,094	-		SO3778	0.65	-0.3
3,929,141	-		SO3778	0.73	-0.8
3,929,151	-		SO3778	0.75	+0.7
3,929,151	-		SO3778	0.75	-0.0
3,929,365	+				-0.1
3,929,401	+				+0.4
3,929,447	+				-1.9
3,929,577	+	cydC	SO3779	0.14	-2.3
3,929,583	-	cydC	SO3779	0.15	-1.2
3,929,583	-	cydC	SO3779	0.15	-1.9
3,929,583	-	cydC	SO3779	0.15	-1.6
3,929,587	+	cydC	SO3779	0.15	-0.2
3,929,663	-	cydC	SO3779	0.19	-2.6
3,929,699	+	cydC	SO3779	0.21	-2.5
3,929,989	-	cydC	SO3779	0.38	-1.6
3,930,056	-	cydC	SO3779	0.42	-2.8
3,930,071	+	cydC	SO3779	0.43	-0.6
3,930,212	-	cydC	SO3779	0.51	-3.4
3,930,304	-	cydC	SO3779	0.56	-2.1
3,930,356	-	cydC	SO3779	0.59	-0.2
3,930,377	-	cydC	SO3779	0.60	-1.9
3,930,828	+	cydC	SO3779	0.86	-2.7
3,930,905	-				-1.1
3,930,965	-				-3.4
3,931,008	+				-0.5
3,931,205	+				-1.9
3,931,213	-				-1.6
3,931,300	+	cydD	SO3780	0.12	-2.3
3,931,308	-	cydD	SO3780	0.12	-2.6
3,931,323	+	cydD	SO3780	0.13	-1.4
3,931,349	+	cydD	SO3780	0.14	-2.3
3,931,357	-	cydD	SO3780	0.15	-1.1
3,931,357	-	cydD	SO3780	0.15	-3.2
3,931,362	+	cydD	SO3780	0.15	-2.4
3,931,370	-	cydD	SO3780	0.15	-1.7
3,931,375	+	cydD	SO3780	0.16	-1.5
3,931,375	+	cydD	SO3780	0.16	-2.7
3,931,375	+	cydD	SO3780	0.16	-1.8
3,931,383	-	cydD	SO3780	0.16	-1.4
3,931,383	-	cydD	SO3780	0.16	-1.0
3,931,385	+	cydD	SO3780	0.16	-1.9
3,931,385	+	cydD	SO3780	0.16	-0.9
3,931,393	-	cydD	SO3780	0.16	-2.2
3,931,393	-	cydD	SO3780	0.16	+0.1
3,931,393	-	cydD	SO3780	0.16	-3.4
3,931,393	-	cydD	SO3780	0.16	-0.3
3,931,393	-	cydD	SO3780	0.16	-2.0
3,931,458	-	cydD	SO3780	0.20	-1.1
3,931,631	+	cydD	SO3780	0.29	-1.3
3,931,631	+	cydD	SO3780	0.29	-1.0
3,931,781	+	cydD	SO3780	0.36	-0.9
3,931,796	+	cydD	SO3780	0.37	-2.4
3,931,898	-	cydD	SO3780	0.43	-0.5
3,931,970	+	cydD	SO3780	0.46	-1.0
3,931,970	+	cydD	SO3780	0.46	-1.4
3,932,017	+	cydD	SO3780	0.49	-1.4