Strain Fitness in Shewanella oneidensis MR-1 around SO3286

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,425,167	-	cydB	SO3285	0.16	-2.4
3,425,211	+	cydB	SO3285	0.20	-0.1
3,425,299	+	cydB	SO3285	0.27	-1.1
3,425,398	+	cydB	SO3285	0.36	-0.5
3,425,398	+	cydB	SO3285	0.36	-1.3
3,425,401	-	cydB	SO3285	0.36	-2.6
3,425,406	-	cydB	SO3285	0.37	-1.5
3,425,406	-	cydB	SO3285	0.37	-1.4
3,425,406	-	cydB	SO3285	0.37	-1.5
3,425,406	-	cydB	SO3285	0.37	-1.9
3,425,548	-	cydB	SO3285	0.49	-1.1
3,425,852	+	cydB	SO3285	0.76	-0.8
3,425,887	+	cydB	SO3285	0.79	-0.9
3,426,081	+				-1.0
3,426,081	+				+0.9
3,426,089	-				-1.0
3,426,089	-				-0.9
3,426,239	+				-0.7
3,426,244	+				-1.2
3,426,244	+				-2.8
3,426,244	+				-0.9
3,426,244	+				-0.5
3,426,252	-				-0.2
3,426,252	-				-2.2
3,426,252	-				-0.9
3,426,252	-				-1.0
3,426,252	-				-1.2
3,426,252	-				-1.8
3,426,316	-	cydA	SO3286	0.11	-1.1
3,426,334	-	cydA	SO3286	0.12	+0.3
3,426,334	-	cydA	SO3286	0.12	-0.8
3,426,334	-	cydA	SO3286	0.12	-1.4
3,426,334	-	cydA	SO3286	0.12	+0.2
3,426,351	+	cydA	SO3286	0.13	-1.1
3,426,403	+	cydA	SO3286	0.17	-1.2
3,426,531	+	cydA	SO3286	0.25	-1.6
3,426,539	-	cydA	SO3286	0.26	-0.5
3,426,610	+	cydA	SO3286	0.30	-1.1
3,426,909	+	cydA	SO3286	0.49	-2.1
3,426,986	-	cydA	SO3286	0.54	-1.0
3,427,149	-	cydA	SO3286	0.65	-1.6
3,427,149	-	cydA	SO3286	0.65	-1.1
3,427,159	+	cydA	SO3286	0.65	-0.4
3,427,276	-	cydA	SO3286	0.73	-1.6
3,427,277	+	cydA	SO3286	0.73	-2.0
3,427,277	+	cydA	SO3286	0.73	-1.7
3,427,277	+	cydA	SO3286	0.73	-0.8
3,427,285	-	cydA	SO3286	0.73	-0.3
3,427,285	-	cydA	SO3286	0.73	-0.7
3,427,401	+	cydA	SO3286	0.81	-0.7
3,427,533	-	cydA	SO3286	0.89	-1.5
3,427,615	-				-1.0
3,427,719	+				-0.2
3,427,752	+				-0.8
3,427,753	-				-0.3
3,428,379	-				+0.3
3,428,410	+				+1.5
3,428,410	+				+0.3
3,428,418	-				+0.1
3,428,456	+				+1.7
3,428,456	+				-0.6
3,428,456	+				-0.4
3,428,464	-				+0.2
3,428,475	+				-0.2