Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tRNA-Lys-6 and tRNA-Lys-5 are separated by 161 nucleotides tRNA-Lys-5 and tRNA-Lys-4 are separated by 33 nucleotides tRNA-Lys-4 and tRNA-Lys-3 are separated by 33 nucleotides tRNA-Lys-3 and tRNA-Lys-8 are separated by 33 nucleotides tRNA-Lys-8 and tRNA-Lys-2 are separated by 33 nucleotides tRNA-Lys-2 and tRNA-Lys-1 are separated by 54 nucleotides tRNA-Lys-1 and SO2746 are separated by 142 nucleotides SO2746 and pal are separated by 24 nucleotides pal and tolB are separated by 46 nucleotides
SO_t056: tRNA-Lys-6 - tRNA-Lys (RefSeq), at 2,866,798 to 2,866,873
tRNA-Lys-6
SO_t057: tRNA-Lys-5 - tRNA-Lys (RefSeq), at 2,867,035 to 2,867,110
tRNA-Lys-5
SO_t058: tRNA-Lys-4 - tRNA-Lys (RefSeq), at 2,867,144 to 2,867,219
tRNA-Lys-4
SO_t059: tRNA-Lys-3 - tRNA-Lys (RefSeq), at 2,867,253 to 2,867,328
tRNA-Lys-3
SO_t060: tRNA-Lys-8 - tRNA-Lys (RefSeq), at 2,867,362 to 2,867,452
tRNA-Lys-8
SO_t061: tRNA-Lys-2 - tRNA-Lys (RefSeq), at 2,867,486 to 2,867,561
tRNA-Lys-2
SO_t062: tRNA-Lys-1 - tRNA-Lys (RefSeq), at 2,867,616 to 2,867,691
tRNA-Lys-1
SO2746: SO2746 - conserved hypothetical protein (NCBI ptt file), at 2,867,834 to 2,868,586
SO2746
SO2747: pal - peptidoglycan-associated lipoprotein (NCBI ptt file), at 2,868,611 to 2,869,144
pal
SO2748: tolB - tolB protein (NCBI ptt file), at 2,869,191 to 2,870,519
tolB
Position (kb)
2867
2868
2869 Strain fitness (log2 ratio)
-1
0
1 at 2867.863 kb on + strand at 2868.101 kb on + strand, within SO2746
Per-strain Table
Or see this region's nucleotide sequence