Strain Fitness in Shewanella oneidensis MR-1 around SO2094

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,188,509	-				+0.3
2,188,853	+	hypB	SO2093	0.47	-0.4
2,188,861	-	hypB	SO2093	0.48	+0.4
2,188,861	-	hypB	SO2093	0.48	+0.0
2,188,954	+	hypB	SO2093	0.60	+0.2
2,188,975	+	hypB	SO2093	0.62	+0.6
2,188,996	+	hypB	SO2093	0.65	-0.1
2,189,004	-	hypB	SO2093	0.66	+0.9
2,189,060	-	hypB	SO2093	0.73	-0.1
2,189,079	+	hypB	SO2093	0.75	-0.1
2,189,079	+	hypB	SO2093	0.75	+0.3
2,189,158	-	hypB	SO2093	0.85	-1.2
2,189,472	-				-0.3
2,189,513	+				+0.6
2,189,545	-				-0.5
2,189,685	+				+0.9
2,189,721	+				+0.3
2,189,721	+				-0.1
2,189,729	-				+0.2
2,189,781	+	hypF	SO2094	0.12	-0.3
2,190,027	-	hypF	SO2094	0.22	+1.2
2,190,222	+	hypF	SO2094	0.30	+0.7
2,190,267	-	hypF	SO2094	0.32	+0.2
2,190,357	-	hypF	SO2094	0.35	-0.2
2,190,382	+	hypF	SO2094	0.36	-0.2
2,190,411	+	hypF	SO2094	0.38	-0.3
2,190,438	+	hypF	SO2094	0.39	+0.3
2,190,446	-	hypF	SO2094	0.39	+0.7
2,190,446	-	hypF	SO2094	0.39	-0.5
2,190,448	+	hypF	SO2094	0.39	+0.2
2,190,451	-	hypF	SO2094	0.39	-0.0
2,190,463	+	hypF	SO2094	0.40	-0.3
2,190,491	-	hypF	SO2094	0.41	-0.2
2,190,546	+	hypF	SO2094	0.43	+0.0
2,190,691	+	hypF	SO2094	0.49	+0.2
2,190,700	-	hypF	SO2094	0.49	-0.8
2,190,700	-	hypF	SO2094	0.49	+0.3
2,190,796	+	hypF	SO2094	0.53	-0.2
2,190,804	-	hypF	SO2094	0.54	+0.4
2,190,887	-	hypF	SO2094	0.57	+0.1
2,190,929	-	hypF	SO2094	0.59	-0.6
2,191,004	-	hypF	SO2094	0.62	-0.9
2,191,130	+	hypF	SO2094	0.67	-0.9
2,191,148	-	hypF	SO2094	0.68	-0.3
2,191,179	-	hypF	SO2094	0.69	-0.5
2,191,189	+	hypF	SO2094	0.70	+0.3
2,191,261	+	hypF	SO2094	0.73	+0.3
2,191,409	+	hypF	SO2094	0.79	-0.5
2,191,502	+	hypF	SO2094	0.82	+0.1
2,191,863	-				-1.0
2,191,881	+				+0.5
2,191,884	-				+0.5
2,192,057	+				+0.2
2,192,087	+				+0.3
2,192,123	+				+1.0
2,192,193	-				+0.2
2,192,261	+		SO2095	0.11	-0.5
2,192,269	-		SO2095	0.11	-0.2
2,192,342	+		SO2095	0.15	-0.0
2,192,350	-		SO2095	0.16	+0.2
2,192,350	-		SO2095	0.16	+0.4
2,192,357	-		SO2095	0.16	-0.4
2,192,357	-		SO2095	0.16	+0.2
2,192,576	+		SO2095	0.28	+0.2
2,192,576	+		SO2095	0.28	+0.2
2,192,576	+		SO2095	0.28	+0.4
2,192,584	-		SO2095	0.28	-0.2
2,192,584	-		SO2095	0.28	-0.2
2,192,599	-		SO2095	0.29	-0.4
2,192,601	+		SO2095	0.29	-0.1
2,192,693	+		SO2095	0.34	+0.6
2,192,693	+		SO2095	0.34	+0.2
2,192,897	+		SO2095	0.45	-0.1