Strain Fitness in Shewanella oneidensis MR-1 around SO1626

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,706,651	-				+0.1
1,706,687	+				+0.2
1,706,695	-				-0.3
1,706,719	+				+0.3
1,707,782	+				-1.9
1,707,800	-				-1.5
1,707,897	-				-0.7
1,707,909	+	glnD	SO1626	0.10	-2.0
1,707,976	-	glnD	SO1626	0.13	-0.5
1,708,023	-	glnD	SO1626	0.15	-0.0
1,708,071	+	glnD	SO1626	0.17	-1.8
1,708,171	+	glnD	SO1626	0.21	-0.3
1,708,329	-	glnD	SO1626	0.27	-1.9
1,708,329	-	glnD	SO1626	0.27	-1.0
1,708,342	-	glnD	SO1626	0.27	-1.7
1,708,401	+	glnD	SO1626	0.29	-1.5
1,708,544	+	glnD	SO1626	0.35	-1.1
1,708,640	-	glnD	SO1626	0.39	+0.3
1,708,738	-	glnD	SO1626	0.42	-0.3
1,708,838	+	glnD	SO1626	0.46	-1.4
1,708,838	+	glnD	SO1626	0.46	+1.0
1,708,933	+	glnD	SO1626	0.50	-0.1
1,708,933	+	glnD	SO1626	0.50	-1.7
1,708,941	-	glnD	SO1626	0.50	-0.8
1,709,027	+	glnD	SO1626	0.54	+0.7
1,709,064	+	glnD	SO1626	0.55	-2.2
1,709,102	+	glnD	SO1626	0.57	-1.5
1,709,114	+	glnD	SO1626	0.57	-0.6
1,709,122	-	glnD	SO1626	0.57	-1.4
1,709,226	+	glnD	SO1626	0.61	-0.5
1,709,300	+	glnD	SO1626	0.64	-1.2
1,709,308	-	glnD	SO1626	0.65	-2.3
1,709,308	-	glnD	SO1626	0.65	-0.6
1,709,309	-	glnD	SO1626	0.65	-1.4
1,709,485	+	glnD	SO1626	0.71	-3.5
1,709,486	-	glnD	SO1626	0.71	-0.5
1,709,490	+	glnD	SO1626	0.72	-0.0
1,709,493	-	glnD	SO1626	0.72	-1.3
1,709,493	-	glnD	SO1626	0.72	-1.2
1,709,493	-	glnD	SO1626	0.72	-0.9
1,709,647	-	glnD	SO1626	0.78	-1.1
1,709,776	+	glnD	SO1626	0.83	-1.4
1,709,900	-	glnD	SO1626	0.87	-1.5
1,709,949	+	glnD	SO1626	0.89	-2.2
1,710,065	+				-1.3
1,710,065	+				+0.8
1,710,065	+				+0.2
1,710,073	-				-0.3
1,710,214	+				-0.7