Strain Fitness in Shewanella oneidensis MR-1 around SO1626
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
1,706,651 | - | +0.1 | |||
1,706,687 | + | +0.2 | |||
1,706,695 | - | -0.3 | |||
1,706,719 | + | +0.3 | |||
1,707,782 | + | -1.9 | |||
1,707,800 | - | -1.5 | |||
1,707,897 | - | -0.7 | |||
1,707,909 | + | glnD | SO1626 | 0.10 | -2.0 |
1,707,976 | - | glnD | SO1626 | 0.13 | -0.5 |
1,708,023 | - | glnD | SO1626 | 0.15 | -0.0 |
1,708,071 | + | glnD | SO1626 | 0.17 | -1.8 |
1,708,171 | + | glnD | SO1626 | 0.21 | -0.3 |
1,708,329 | - | glnD | SO1626 | 0.27 | -1.9 |
1,708,329 | - | glnD | SO1626 | 0.27 | -1.0 |
1,708,342 | - | glnD | SO1626 | 0.27 | -1.7 |
1,708,401 | + | glnD | SO1626 | 0.29 | -1.5 |
1,708,544 | + | glnD | SO1626 | 0.35 | -1.1 |
1,708,640 | - | glnD | SO1626 | 0.39 | +0.3 |
1,708,738 | - | glnD | SO1626 | 0.42 | -0.3 |
1,708,838 | + | glnD | SO1626 | 0.46 | -1.4 |
1,708,838 | + | glnD | SO1626 | 0.46 | +1.0 |
1,708,933 | + | glnD | SO1626 | 0.50 | -0.1 |
1,708,933 | + | glnD | SO1626 | 0.50 | -1.7 |
1,708,941 | - | glnD | SO1626 | 0.50 | -0.8 |
1,709,027 | + | glnD | SO1626 | 0.54 | +0.7 |
1,709,064 | + | glnD | SO1626 | 0.55 | -2.2 |
1,709,102 | + | glnD | SO1626 | 0.57 | -1.5 |
1,709,114 | + | glnD | SO1626 | 0.57 | -0.6 |
1,709,122 | - | glnD | SO1626 | 0.57 | -1.4 |
1,709,226 | + | glnD | SO1626 | 0.61 | -0.5 |
1,709,300 | + | glnD | SO1626 | 0.64 | -1.2 |
1,709,308 | - | glnD | SO1626 | 0.65 | -2.3 |
1,709,308 | - | glnD | SO1626 | 0.65 | -0.6 |
1,709,309 | - | glnD | SO1626 | 0.65 | -1.4 |
1,709,485 | + | glnD | SO1626 | 0.71 | -3.5 |
1,709,486 | - | glnD | SO1626 | 0.71 | -0.5 |
1,709,490 | + | glnD | SO1626 | 0.72 | -0.0 |
1,709,493 | - | glnD | SO1626 | 0.72 | -1.3 |
1,709,493 | - | glnD | SO1626 | 0.72 | -1.2 |
1,709,493 | - | glnD | SO1626 | 0.72 | -0.9 |
1,709,647 | - | glnD | SO1626 | 0.78 | -1.1 |
1,709,776 | + | glnD | SO1626 | 0.83 | -1.4 |
1,709,900 | - | glnD | SO1626 | 0.87 | -1.5 |
1,709,949 | + | glnD | SO1626 | 0.89 | -2.2 |
1,710,065 | + | -1.3 | |||
1,710,065 | + | +0.8 | |||
1,710,065 | + | +0.2 | |||
1,710,073 | - | -0.3 | |||
1,710,214 | + | -0.7 |
Or see this region's nucleotide sequence