Strain Fitness in Shewanella oneidensis MR-1 around SO1018

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,055,788	+	nuoF	SO1017	0.29	+0.0
1,055,796	-	nuoF	SO1017	0.30	-0.5
1,055,796	-	nuoF	SO1017	0.30	+0.3
1,055,862	-	nuoF	SO1017	0.35	+0.4
1,055,933	-	nuoF	SO1017	0.40	-0.6
1,055,954	-	nuoF	SO1017	0.41	-0.3
1,055,975	+	nuoF	SO1017	0.43	+1.2
1,056,046	-	nuoF	SO1017	0.48	-0.4
1,056,060	-	nuoF	SO1017	0.49	+0.3
1,056,064	+	nuoF	SO1017	0.49	-0.4
1,056,064	+	nuoF	SO1017	0.49	-0.4
1,056,152	+	nuoF	SO1017	0.56	-1.4
1,056,160	+	nuoF	SO1017	0.56	-0.1
1,056,160	-	nuoF	SO1017	0.56	-0.7
1,056,182	-	nuoF	SO1017	0.58	-1.0
1,056,266	-				+0.5
1,056,271	+				-1.0
1,056,271	+				-0.9
1,056,279	-				-0.5
1,056,279	-				+0.2
1,056,299	+				-0.7
1,056,370	-				-0.5
1,056,441	-	nuoF	SO1017	0.76	-0.2
1,056,443	-	nuoF	SO1017	0.77	-0.2
1,056,491	-	nuoF	SO1017	0.80	-1.8
1,056,568	-	nuoF	SO1017	0.86	-0.7
1,056,591	+	nuoF	SO1017	0.87	+0.1
1,056,594	-	nuoF	SO1017	0.87	-0.4
1,056,644	+				+0.3
1,056,652	-				-1.1
1,056,696	+				-0.1
1,056,755	+				-1.5
1,056,762	+				-0.8
1,056,763	-				-1.3
1,056,763	-				-0.7
1,056,763	-				-0.9
1,056,770	-				-0.8
1,056,802	+				-0.1
1,056,810	-				-0.6
1,056,872	+	nuoE	SO1018	0.20	-1.4
1,056,883	+	nuoE	SO1018	0.22	-0.3
1,056,942	-	nuoE	SO1018	0.33	-0.8
1,056,945	+	nuoE	SO1018	0.33	-0.7
1,056,947	+	nuoE	SO1018	0.34	-0.6
1,057,121	+	nuoE	SO1018	0.66	-0.6
1,057,148	-	nuoE	SO1018	0.71	-0.9
1,057,150	+	nuoE	SO1018	0.71	-0.3
1,057,150	+	nuoE	SO1018	0.71	-0.0
1,057,158	-	nuoE	SO1018	0.73	-0.8
1,057,301	+				-0.1
1,057,368	-				-0.1
1,057,386	+				-0.6
1,057,392	-				-0.1
1,057,402	-				-0.3
1,057,402	-				-0.6
1,057,452	+				-0.8
1,057,455	-				-0.7
1,057,557	-				+0.1
1,057,707	+	nuoCD	SO1019	0.18	-0.2
1,057,742	-	nuoCD	SO1019	0.20	-0.3
1,057,742	-	nuoCD	SO1019	0.20	+0.7
1,057,796	+	nuoCD	SO1019	0.23	-2.1
1,057,804	-	nuoCD	SO1019	0.23	-0.5
1,058,048	-	nuoCD	SO1019	0.37	-0.4
1,058,156	-	nuoCD	SO1019	0.43	-0.7
1,058,182	+	nuoCD	SO1019	0.44	-0.1
1,058,190	-	nuoCD	SO1019	0.44	-0.8