Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0695 and dsbD are separated by 152 nucleotides dsbD and cutA overlap by 4 nucleotides cutA and fsxA are separated by 222 nucleotides
SO0695: SO0695 - glutathione-regulated potassium-efflux system protein KefC, putative (NCBI ptt file), at 712,378 to 714,021
SO0695
SO0696: dsbD - thiol:disulfide interchange protein DsbD (NCBI ptt file), at 714,174 to 716,006
dsbD
SO0697: cutA - periplasmic divalent cation tolerance protein CutA (NCBI ptt file), at 716,003 to 716,326
cutA
SO0698: fsxA - fxsA protein (NCBI ptt file), at 716,549 to 717,112
fsxA
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -2
-1
0
1 at 713.344 kb on + strand, within SO0695 at 713.379 kb on + strand, within SO0695 at 713.418 kb on - strand, within SO0695 at 713.436 kb on + strand, within SO0695 at 713.436 kb on + strand, within SO0695 at 713.444 kb on - strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.446 kb on + strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.454 kb on - strand, within SO0695 at 713.514 kb on - strand, within SO0695 at 713.619 kb on + strand, within SO0695 at 713.656 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.670 kb on + strand, within SO0695 at 713.678 kb on - strand, within SO0695 at 713.699 kb on - strand, within SO0695 at 713.717 kb on - strand, within SO0695 at 713.801 kb on + strand, within SO0695 at 713.801 kb on + strand, within SO0695 at 713.809 kb on - strand, within SO0695 at 713.847 kb on + strand, within SO0695 at 713.855 kb on - strand, within SO0695 at 713.860 kb on - strand at 713.867 kb on - strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.922 kb on + strand at 713.944 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 713.961 kb on + strand at 714.018 kb on + strand at 714.219 kb on + strand at 714.233 kb on + strand at 714.328 kb on + strand at 714.336 kb on - strand at 714.395 kb on + strand, within dsbD at 714.395 kb on + strand, within dsbD at 714.450 kb on - strand, within dsbD at 714.532 kb on - strand, within dsbD at 714.641 kb on - strand, within dsbD at 714.647 kb on - strand, within dsbD at 714.724 kb on - strand, within dsbD at 714.807 kb on + strand, within dsbD at 714.918 kb on - strand, within dsbD at 715.185 kb on + strand, within dsbD at 715.193 kb on - strand, within dsbD at 715.253 kb on - strand, within dsbD at 715.257 kb on + strand, within dsbD at 715.288 kb on - strand, within dsbD at 715.376 kb on + strand, within dsbD at 715.390 kb on - strand, within dsbD at 715.447 kb on - strand, within dsbD at 715.491 kb on + strand, within dsbD at 715.630 kb on - strand, within dsbD at 715.630 kb on - strand, within dsbD at 715.634 kb on + strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.642 kb on - strand, within dsbD at 715.766 kb on - strand, within dsbD at 715.884 kb on - strand at 715.982 kb on + strand at 715.990 kb on - strand at 716.008 kb on + strand at 716.013 kb on + strand at 716.037 kb on - strand, within cutA at 716.039 kb on + strand, within cutA at 716.122 kb on - strand, within cutA at 716.127 kb on - strand, within cutA at 716.273 kb on + strand, within cutA at 716.326 kb on - strand at 716.326 kb on - strand at 716.328 kb on + strand at 716.331 kb on - strand at 716.467 kb on - strand at 716.603 kb on + strand at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.643 kb on + strand, within fsxA at 716.650 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.662 kb on - strand, within fsxA at 716.669 kb on + strand, within fsxA at 716.687 kb on - strand, within fsxA at 716.779 kb on - strand, within fsxA at 716.935 kb on + strand, within fsxA at 716.939 kb on + strand, within fsxA at 716.947 kb on - strand, within fsxA at 716.981 kb on - strand, within fsxA at 716.998 kb on + strand, within fsxA
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 713,344 + SO0695 0.59 +0.2 713,379 + SO0695 0.61 -0.1 713,418 - SO0695 0.63 +0.4 713,436 + SO0695 0.64 +0.2 713,436 + SO0695 0.64 +0.7 713,444 - SO0695 0.65 -0.1 713,446 + SO0695 0.65 -0.3 713,446 + SO0695 0.65 -0.1 713,446 + SO0695 0.65 -1.1 713,454 - SO0695 0.65 -0.0 713,454 - SO0695 0.65 +0.4 713,454 - SO0695 0.65 +0.0 713,514 - SO0695 0.69 +0.3 713,619 + SO0695 0.75 +0.5 713,656 + SO0695 0.78 +0.7 713,670 + SO0695 0.79 +0.2 713,670 + SO0695 0.79 -0.2 713,670 + SO0695 0.79 -0.5 713,678 - SO0695 0.79 +1.4 713,699 - SO0695 0.80 -0.9 713,717 - SO0695 0.81 +0.4 713,801 + SO0695 0.87 +0.2 713,801 + SO0695 0.87 +0.1 713,809 - SO0695 0.87 -0.1 713,847 + SO0695 0.89 +0.2 713,855 - SO0695 0.90 -0.4 713,860 - -0.1 713,867 - -0.2 713,922 + +0.4 713,922 + +0.9 713,922 + -0.0 713,922 + +0.1 713,922 + -0.1 713,944 + +0.8 713,961 + -0.6 713,961 + -0.6 713,961 + +0.5 713,961 + +0.7 714,018 + +0.7 714,219 + -0.1 714,233 + +0.4 714,328 + -0.9 714,336 - -0.6 714,395 + dsbD SO0696 0.12 -1.0 714,395 + dsbD SO0696 0.12 +0.4 714,450 - dsbD SO0696 0.15 -0.6 714,532 - dsbD SO0696 0.20 -0.9 714,641 - dsbD SO0696 0.25 -0.6 714,647 - dsbD SO0696 0.26 -2.4 714,724 - dsbD SO0696 0.30 -1.1 714,807 + dsbD SO0696 0.35 -0.1 714,918 - dsbD SO0696 0.41 -2.3 715,185 + dsbD SO0696 0.55 -1.4 715,193 - dsbD SO0696 0.56 -1.3 715,253 - dsbD SO0696 0.59 -1.5 715,257 + dsbD SO0696 0.59 -0.0 715,288 - dsbD SO0696 0.61 -0.4 715,376 + dsbD SO0696 0.66 -1.6 715,390 - dsbD SO0696 0.66 -0.4 715,447 - dsbD SO0696 0.69 -0.0 715,491 + dsbD SO0696 0.72 +0.1 715,630 - dsbD SO0696 0.79 -0.9 715,630 - dsbD SO0696 0.79 -1.2 715,634 + dsbD SO0696 0.80 -1.7 715,642 - dsbD SO0696 0.80 -1.2 715,642 - dsbD SO0696 0.80 -0.7 715,766 - dsbD SO0696 0.87 -1.3 715,884 - -1.5 715,982 + -1.3 715,990 - -2.3 716,008 + +0.2 716,013 + -0.7 716,037 - cutA SO0697 0.10 +1.1 716,039 + cutA SO0697 0.11 -0.5 716,122 - cutA SO0697 0.37 -0.1 716,127 - cutA SO0697 0.38 -1.3 716,273 + cutA SO0697 0.83 -0.4 716,326 - +0.0 716,326 - -0.6 716,328 + -1.6 716,331 - +0.7 716,467 - -1.2 716,603 + -0.3 716,643 + fsxA SO0698 0.17 -0.0 716,643 + fsxA SO0698 0.17 +0.0 716,643 + fsxA SO0698 0.17 +0.5 716,650 - fsxA SO0698 0.18 +0.3 716,662 - fsxA SO0698 0.20 +0.3 716,662 - fsxA SO0698 0.20 -1.0 716,669 + fsxA SO0698 0.21 +0.3 716,687 - fsxA SO0698 0.24 -0.1 716,779 - fsxA SO0698 0.41 -0.1 716,935 + fsxA SO0698 0.68 +0.7 716,939 + fsxA SO0698 0.69 +0.1 716,947 - fsxA SO0698 0.71 -0.3 716,981 - fsxA SO0698 0.77 +0.1 716,998 + fsxA SO0698 0.80 +0.9
Or see this region's nucleotide sequence