Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0285 and aroK are separated by 219 nucleotides aroK and aroB are separated by 5 nucleotides aroB and SO0288 are separated by 18 nucleotides
SO0285: SO0285 - type IV pilus biogenesis protein PilQ (NCBI ptt file), at 291,567 to 293,621
SO0285
SO0286: aroK - shikimate kinase (NCBI ptt file), at 293,841 to 294,356
aroK
SO0287: aroB - 3-dehydroquinate synthase (NCBI ptt file), at 294,362 to 295,441
aroB
SO0288: SO0288 - damX domain protein (NCBI ptt file), at 295,460 to 296,872
SO0288
Position (kb) 294
295
296 Strain fitness (log2 ratio) -1
0
1 at 293.368 kb on - strand, within SO0285 at 293.368 kb on - strand, within SO0285 at 293.457 kb on - strand at 293.555 kb on + strand at 293.582 kb on - strand at 293.616 kb on + strand at 293.616 kb on + strand at 293.624 kb on - strand at 293.624 kb on - strand at 293.624 kb on - strand at 293.750 kb on + strand at 293.755 kb on + strand at 294.416 kb on + strand at 294.495 kb on - strand, within aroB at 294.518 kb on - strand, within aroB at 294.520 kb on + strand, within aroB at 294.922 kb on - strand, within aroB at 294.926 kb on + strand, within aroB at 295.001 kb on + strand, within aroB at 295.003 kb on - strand, within aroB at 295.003 kb on - strand, within aroB at 295.067 kb on + strand, within aroB at 295.085 kb on + strand, within aroB at 295.176 kb on - strand, within aroB at 295.178 kb on + strand, within aroB at 295.334 kb on + strand at 295.334 kb on + strand at 295.432 kb on - strand at 295.437 kb on + strand at 295.478 kb on + strand at 295.561 kb on + strand at 295.578 kb on + strand at 295.578 kb on + strand at 295.595 kb on + strand at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.856 kb on + strand, within SO0288 at 295.864 kb on - strand, within SO0288 at 295.876 kb on - strand, within SO0288 at 295.913 kb on - strand, within SO0288 at 295.956 kb on + strand, within SO0288 at 295.993 kb on + strand, within SO0288 at 296.071 kb on + strand, within SO0288 at 296.090 kb on + strand, within SO0288 at 296.098 kb on - strand, within SO0288 at 296.105 kb on - strand, within SO0288 at 296.126 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.152 kb on + strand, within SO0288 at 296.249 kb on + strand, within SO0288 at 296.408 kb on + strand, within SO0288
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 293,368 - SO0285 0.88 -0.4 293,368 - SO0285 0.88 +1.2 293,457 - -0.4 293,555 + -0.2 293,582 - -0.0 293,616 + -0.5 293,616 + +0.6 293,624 - +0.5 293,624 - +1.0 293,624 - -0.3 293,750 + -0.7 293,755 + -0.4 294,416 + -0.6 294,495 - aroB SO0287 0.12 -0.8 294,518 - aroB SO0287 0.14 -0.1 294,520 + aroB SO0287 0.15 -0.8 294,922 - aroB SO0287 0.52 -0.5 294,926 + aroB SO0287 0.52 -0.6 295,001 + aroB SO0287 0.59 -0.3 295,003 - aroB SO0287 0.59 -0.3 295,003 - aroB SO0287 0.59 -1.3 295,067 + aroB SO0287 0.65 -0.3 295,085 + aroB SO0287 0.67 -0.9 295,176 - aroB SO0287 0.75 -0.8 295,178 + aroB SO0287 0.76 -0.8 295,334 + +0.5 295,334 + +0.4 295,432 - -0.3 295,437 + +0.2 295,478 + -0.4 295,561 + +0.2 295,578 + -0.6 295,578 + -0.1 295,595 + -0.4 295,856 + SO0288 0.28 +0.1 295,856 + SO0288 0.28 +0.5 295,856 + SO0288 0.28 -0.2 295,864 - SO0288 0.29 +0.7 295,876 - SO0288 0.29 +0.5 295,913 - SO0288 0.32 +0.4 295,956 + SO0288 0.35 +0.0 295,993 + SO0288 0.38 -1.5 296,071 + SO0288 0.43 -0.8 296,090 + SO0288 0.45 +0.2 296,098 - SO0288 0.45 +0.1 296,105 - SO0288 0.46 +1.0 296,126 + SO0288 0.47 +0.8 296,152 + SO0288 0.49 +0.1 296,152 + SO0288 0.49 -0.5 296,249 + SO0288 0.56 -0.7 296,408 + SO0288 0.67 -0.1
Or see this region's nucleotide sequence