Strain Fitness in Shewanella oneidensis MR-1 around SO0003

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,722	-		SO0002	0.50	+0.1
1,840	+		SO0002	0.57	-0.4
1,940	+		SO0002	0.64	+0.4
1,947	+		SO0002	0.64	-1.0
1,949	-		SO0002	0.64	-0.3
1,954	+		SO0002	0.64	+0.3
1,955	+		SO0002	0.65	-0.3
1,955	+		SO0002	0.65	+0.2
1,963	-		SO0002	0.65	-0.3
1,978	+		SO0002	0.66	-0.1
2,001	+		SO0002	0.68	-0.4
2,053	-		SO0002	0.71	-0.0
2,103	+		SO0002	0.74	+0.2
2,103	+		SO0002	0.74	+0.3
2,160	-		SO0002	0.78	-0.2
2,177	+		SO0002	0.79	-0.4
2,211	+		SO0002	0.81	+0.5
2,272	+		SO0002	0.85	-0.6
2,315	+		SO0002	0.88	-0.4
2,350	+				+0.5
2,358	-				-0.4
2,408	-				+0.2
2,454	+				-0.1
2,454	-				-0.7
2,462	-				+0.7
2,462	-				+0.4
2,770	+	trmE	SO0003	0.13	-0.9
2,778	-	trmE	SO0003	0.14	-1.4
2,778	-	trmE	SO0003	0.14	+0.1
2,846	+	trmE	SO0003	0.19	-1.5
2,846	+	trmE	SO0003	0.19	-1.2
3,134	+	trmE	SO0003	0.40	-0.3
3,137	-	trmE	SO0003	0.40	-3.2
3,342	-	trmE	SO0003	0.55	-1.8
3,584	-	trmE	SO0003	0.72	-0.4
3,589	-	trmE	SO0003	0.73	+0.1
3,648	+	trmE	SO0003	0.77	-1.1
3,700	+	trmE	SO0003	0.81	-0.8
3,774	+	trmE	SO0003	0.86	-1.9
3,774	+	trmE	SO0003	0.86	-2.3
3,774	+	trmE	SO0003	0.86	-0.4
3,817	+	trmE	SO0003	0.89	-1.1
4,031	-				+0.1