Strain Fitness in Shewanella oneidensis MR-1 around SO0067

Experiment: L-Lysine 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0066 and SO0067 overlap by 4 nucleotidesSO0067 and SO0068 are separated by 24 nucleotidesSO0068 and SO0069 are separated by 57 nucleotides SO0066: SO0066 - conserved hypothetical protein (NCBI ptt file), at 72,364 to 78,060 SO0066 SO0067: SO0067 - penicillin-binding protein 1C, putative (NCBI ptt file), at 78,057 to 80,339 SO0067 SO0068: SO0068 - hypothetical protein (NCBI ptt file), at 80,364 to 80,609 SO0068 SO0069: SO0069 - transport protein, putative (NCBI ptt file), at 80,667 to 81,806 SO0069 Position (kb) 78 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2at 77.092 kb on - strand, within SO0066at 77.121 kb on + strand, within SO0066at 77.121 kb on + strand, within SO0066at 77.129 kb on - strand, within SO0066at 77.129 kb on - strand, within SO0066at 77.242 kb on - strand, within SO0066at 77.301 kb on + strand, within SO0066at 77.301 kb on + strand, within SO0066at 77.301 kb on + strand, within SO0066at 77.304 kb on - strand, within SO0066at 77.309 kb on - strand, within SO0066at 77.309 kb on - strand, within SO0066at 77.309 kb on - strand, within SO0066at 77.309 kb on - strand, within SO0066at 77.309 kb on - strand, within SO0066at 77.310 kb on - strand, within SO0066at 77.364 kb on + strand, within SO0066at 77.424 kb on + strand, within SO0066at 77.424 kb on + strand, within SO0066at 77.432 kb on - strand, within SO0066at 77.549 kb on + strandat 77.549 kb on + strandat 77.549 kb on + strandat 77.557 kb on - strandat 77.592 kb on + strandat 77.592 kb on + strandat 77.600 kb on - strandat 77.619 kb on - strandat 77.630 kb on + strandat 77.630 kb on + strandat 77.630 kb on + strandat 77.630 kb on + strandat 77.630 kb on + strandat 77.651 kb on + strandat 77.699 kb on + strandat 77.699 kb on + strandat 77.820 kb on - strandat 77.987 kb on + strandat 77.987 kb on + strandat 78.000 kb on + strandat 78.000 kb on + strandat 78.106 kb on + strandat 78.106 kb on + strandat 78.106 kb on + strandat 78.106 kb on + strandat 78.106 kb on + strandat 78.113 kb on + strandat 78.113 kb on + strandat 78.114 kb on - strandat 78.114 kb on - strandat 78.114 kb on - strandat 78.121 kb on - strandat 78.121 kb on - strandat 78.159 kb on - strandat 78.169 kb on - strandat 78.195 kb on + strandat 78.195 kb on + strandat 78.195 kb on + strandat 78.203 kb on - strandat 78.203 kb on - strandat 78.203 kb on - strandat 78.223 kb on - strandat 78.301 kb on + strand, within SO0067at 78.307 kb on + strand, within SO0067at 78.322 kb on + strand, within SO0067at 78.429 kb on + strand, within SO0067at 78.432 kb on - strand, within SO0067at 78.442 kb on - strand, within SO0067at 78.452 kb on - strand, within SO0067at 78.497 kb on + strand, within SO0067at 78.505 kb on - strand, within SO0067at 78.509 kb on + strand, within SO0067at 78.515 kb on - strand, within SO0067at 78.515 kb on - strand, within SO0067at 78.601 kb on - strand, within SO0067at 78.601 kb on - strand, within SO0067at 78.606 kb on + strand, within SO0067at 78.614 kb on - strand, within SO0067at 78.614 kb on - strand, within SO0067at 78.753 kb on + strand, within SO0067at 78.768 kb on - strand, within SO0067at 78.841 kb on + strand, within SO0067at 78.841 kb on + strand, within SO0067at 78.849 kb on - strand, within SO0067at 78.876 kb on - strand, within SO0067at 78.910 kb on + strand, within SO0067at 78.923 kb on - strand, within SO0067at 79.016 kb on + strand, within SO0067at 79.050 kb on - strand, within SO0067at 79.064 kb on - strand, within SO0067at 79.064 kb on - strand, within SO0067at 79.070 kb on - strand, within SO0067at 79.181 kb on + strand, within SO0067at 79.181 kb on + strand, within SO0067at 79.326 kb on + strand, within SO0067at 79.378 kb on + strand, within SO0067at 79.381 kb on - strand, within SO0067at 79.381 kb on - strand, within SO0067at 79.419 kb on - strand, within SO0067at 79.460 kb on + strand, within SO0067at 79.496 kb on + strand, within SO0067at 79.556 kb on - strand, within SO0067at 79.657 kb on - strand, within SO0067at 79.755 kb on + strand, within SO0067at 79.755 kb on + strand, within SO0067at 79.827 kb on - strand, within SO0067at 79.827 kb on - strand, within SO0067at 79.840 kb on + strand, within SO0067at 79.890 kb on + strand, within SO0067at 79.906 kb on - strand, within SO0067at 79.933 kb on + strand, within SO0067at 79.967 kb on + strand, within SO0067at 80.003 kb on + strand, within SO0067at 80.071 kb on - strand, within SO0067at 80.074 kb on - strand, within SO0067at 80.164 kb on - strandat 80.214 kb on + strandat 80.227 kb on - strandat 80.243 kb on - strandat 80.244 kb on - strandat 80.314 kb on + strandat 80.341 kb on - strandat 80.348 kb on - strandat 80.348 kb on - strandat 80.348 kb on - strandat 80.348 kb on - strandat 80.356 kb on - strandat 80.362 kb on + strandat 80.369 kb on - strandat 80.560 kb on - strand, within SO0068at 80.618 kb on + strandat 80.624 kb on - strandat 80.626 kb on - strandat 80.631 kb on - strandat 80.643 kb on + strandat 80.657 kb on + strandat 80.724 kb on + strandat 80.724 kb on + strandat 80.724 kb on + strandat 80.732 kb on - strandat 80.775 kb on + strandat 80.781 kb on + strand, within SO0069at 80.783 kb on - strand, within SO0069at 80.789 kb on - strand, within SO0069at 80.832 kb on - strand, within SO0069at 80.838 kb on + strand, within SO0069at 80.846 kb on - strand, within SO0069at 80.846 kb on - strand, within SO0069at 80.880 kb on - strand, within SO0069at 80.880 kb on - strand, within SO0069at 80.943 kb on - strand, within SO0069at 81.021 kb on - strand, within SO0069at 81.021 kb on - strand, within SO0069at 81.061 kb on + strand, within SO0069at 81.062 kb on + strand, within SO0069at 81.069 kb on + strand, within SO0069at 81.069 kb on + strand, within SO0069at 81.069 kb on + strand, within SO0069at 81.077 kb on - strand, within SO0069at 81.077 kb on - strand, within SO0069at 81.170 kb on + strand, within SO0069at 81.196 kb on - strand, within SO0069at 81.204 kb on - strand, within SO0069at 81.220 kb on - strand, within SO0069at 81.237 kb on + strand, within SO0069at 81.249 kb on + strand, within SO0069at 81.257 kb on - strand, within SO0069at 81.257 kb on - strand, within SO0069at 81.257 kb on - strand, within SO0069at 81.267 kb on - strand, within SO0069at 81.313 kb on + strand, within SO0069at 81.321 kb on - strand, within SO0069

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 100 mM
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77,092 - SO0066 0.83 +0.5
77,121 + SO0066 0.84 -1.3
77,121 + SO0066 0.84 +1.0
77,129 - SO0066 0.84 -1.1
77,129 - SO0066 0.84 -0.1
77,242 - SO0066 0.86 -0.8
77,301 + SO0066 0.87 +0.0
77,301 + SO0066 0.87 +0.3
77,301 + SO0066 0.87 -0.5
77,304 - SO0066 0.87 -0.3
77,309 - SO0066 0.87 -1.1
77,309 - SO0066 0.87 +0.1
77,309 - SO0066 0.87 +0.4
77,309 - SO0066 0.87 -0.1
77,309 - SO0066 0.87 +0.2
77,310 - SO0066 0.87 +0.0
77,364 + SO0066 0.88 -0.6
77,424 + SO0066 0.89 +1.0
77,424 + SO0066 0.89 -0.6
77,432 - SO0066 0.89 -0.1
77,549 + +0.3
77,549 + +0.6
77,549 + -0.1
77,557 - -0.7
77,592 + -0.1
77,592 + +0.1
77,600 - -0.2
77,619 - -0.1
77,630 + +0.2
77,630 + +0.2
77,630 + +0.1
77,630 + -0.9
77,630 + +0.4
77,651 + -0.0
77,699 + +0.5
77,699 + -0.1
77,820 - -0.9
77,987 + -0.5
77,987 + -0.2
78,000 + -1.3
78,000 + -1.3
78,106 + -0.0
78,106 + +0.6
78,106 + -0.2
78,106 + -0.3
78,106 + -0.8
78,113 + -1.0
78,113 + -0.2
78,114 - -0.9
78,114 - -0.8
78,114 - +0.4
78,121 - +0.4
78,121 - -0.8
78,159 - -0.3
78,169 - +0.8
78,195 + -0.4
78,195 + +0.0
78,195 + +0.8
78,203 - -1.6
78,203 - -0.5
78,203 - -0.2
78,223 - +0.1
78,301 + SO0067 0.11 +0.8
78,307 + SO0067 0.11 -1.5
78,322 + SO0067 0.12 +0.2
78,429 + SO0067 0.16 -0.5
78,432 - SO0067 0.16 -0.0
78,442 - SO0067 0.17 -0.9
78,452 - SO0067 0.17 +0.3
78,497 + SO0067 0.19 +1.9
78,505 - SO0067 0.20 +0.3
78,509 + SO0067 0.20 -0.2
78,515 - SO0067 0.20 +0.7
78,515 - SO0067 0.20 -0.2
78,601 - SO0067 0.24 -0.1
78,601 - SO0067 0.24 -0.6
78,606 + SO0067 0.24 -0.6
78,614 - SO0067 0.24 -0.6
78,614 - SO0067 0.24 +0.1
78,753 + SO0067 0.30 -0.8
78,768 - SO0067 0.31 -0.7
78,841 + SO0067 0.34 -1.3
78,841 + SO0067 0.34 -1.1
78,849 - SO0067 0.35 +0.3
78,876 - SO0067 0.36 -0.7
78,910 + SO0067 0.37 -0.1
78,923 - SO0067 0.38 +2.0
79,016 + SO0067 0.42 -0.2
79,050 - SO0067 0.43 -1.6
79,064 - SO0067 0.44 +0.8
79,064 - SO0067 0.44 +0.0
79,070 - SO0067 0.44 -2.1
79,181 + SO0067 0.49 +0.4
79,181 + SO0067 0.49 -0.0
79,326 + SO0067 0.56 -0.0
79,378 + SO0067 0.58 -0.4
79,381 - SO0067 0.58 -0.5
79,381 - SO0067 0.58 -0.6
79,419 - SO0067 0.60 -0.2
79,460 + SO0067 0.61 -0.8
79,496 + SO0067 0.63 -0.4
79,556 - SO0067 0.66 +0.1
79,657 - SO0067 0.70 -0.9
79,755 + SO0067 0.74 -0.1
79,755 + SO0067 0.74 +0.9
79,827 - SO0067 0.78 -0.8
79,827 - SO0067 0.78 -0.1
79,840 + SO0067 0.78 -0.2
79,890 + SO0067 0.80 -0.2
79,906 - SO0067 0.81 -0.1
79,933 + SO0067 0.82 -0.3
79,967 + SO0067 0.84 -0.2
80,003 + SO0067 0.85 +0.3
80,071 - SO0067 0.88 -0.6
80,074 - SO0067 0.88 +1.1
80,164 - -0.1
80,214 + +0.2
80,227 - -0.8
80,243 - +0.2
80,244 - +0.3
80,314 + +0.3
80,341 - +0.6
80,348 - +0.8
80,348 - +0.1
80,348 - -1.1
80,348 - +0.7
80,356 - -0.4
80,362 + +0.2
80,369 - +0.2
80,560 - SO0068 0.80 +0.7
80,618 + -1.1
80,624 - +0.5
80,626 - +1.2
80,631 - +0.4
80,643 + -0.4
80,657 + -0.0
80,724 + +0.3
80,724 + +0.3
80,724 + +1.4
80,732 - +1.1
80,775 + -0.7
80,781 + SO0069 0.10 -0.7
80,783 - SO0069 0.10 -0.8
80,789 - SO0069 0.11 -1.1
80,832 - SO0069 0.14 +0.3
80,838 + SO0069 0.15 -0.5
80,846 - SO0069 0.16 +0.3
80,846 - SO0069 0.16 -0.1
80,880 - SO0069 0.19 +0.4
80,880 - SO0069 0.19 -0.8
80,943 - SO0069 0.24 +0.0
81,021 - SO0069 0.31 -0.5
81,021 - SO0069 0.31 -0.4
81,061 + SO0069 0.35 -0.9
81,062 + SO0069 0.35 -0.4
81,069 + SO0069 0.35 -0.1
81,069 + SO0069 0.35 -0.4
81,069 + SO0069 0.35 +0.2
81,077 - SO0069 0.36 +0.3
81,077 - SO0069 0.36 +0.3
81,170 + SO0069 0.44 -1.7
81,196 - SO0069 0.46 +0.6
81,204 - SO0069 0.47 -0.4
81,220 - SO0069 0.49 -0.3
81,237 + SO0069 0.50 +0.2
81,249 + SO0069 0.51 +0.6
81,257 - SO0069 0.52 -0.0
81,257 - SO0069 0.52 +0.2
81,257 - SO0069 0.52 +0.3
81,267 - SO0069 0.53 -0.8
81,313 + SO0069 0.57 +0.3
81,321 - SO0069 0.57 +0.3

Or see this region's nucleotide sequence