Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0953 and SO0954 are separated by 35 nucleotides SO0954 and SO0955 are separated by 59 nucleotides SO0955 and ahpF are separated by 65 nucleotides ahpF and ahpC are separated by 234 nucleotides
SO0953: SO0953 - hypothetical protein (NCBI ptt file), at 990,120 to 990,449
SO0953
SO0954: SO0954 - acetyltransferase, GNAT family (NCBI ptt file), at 990,485 to 990,904
SO0954
SO0955: SO0955 - hypothetical protein (NCBI ptt file), at 990,964 to 991,149
SO0955
SO0956: ahpF - alkyl hydroperoxide reductase, F subunit (NCBI ptt file), at 991,215 to 992,798
ahpF
SO0958: ahpC - alkyl hydroperoxide reductase, C subunit (NCBI ptt file), at 993,033 to 993,602
ahpC
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2 at 990.433 kb on + strand at 990.441 kb on - strand at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.568 kb on + strand, within SO0954 at 990.581 kb on + strand, within SO0954 at 990.658 kb on - strand, within SO0954 at 990.669 kb on - strand, within SO0954 at 990.684 kb on + strand, within SO0954 at 990.726 kb on + strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.734 kb on - strand, within SO0954 at 990.768 kb on + strand, within SO0954 at 991.034 kb on + strand, within SO0955 at 991.041 kb on + strand, within SO0955 at 991.057 kb on - strand, within SO0955 at 991.057 kb on - strand, within SO0955 at 991.077 kb on - strand, within SO0955 at 991.212 kb on + strand at 991.212 kb on + strand at 991.222 kb on + strand at 991.230 kb on - strand at 991.230 kb on - strand at 991.306 kb on + strand at 991.376 kb on + strand, within ahpF at 991.376 kb on + strand, within ahpF at 991.528 kb on + strand, within ahpF at 991.536 kb on - strand, within ahpF at 991.568 kb on + strand, within ahpF at 991.576 kb on - strand, within ahpF at 991.576 kb on - strand, within ahpF at 991.631 kb on - strand, within ahpF at 991.671 kb on + strand, within ahpF at 991.672 kb on + strand, within ahpF at 991.677 kb on - strand, within ahpF at 991.680 kb on - strand, within ahpF at 991.698 kb on + strand, within ahpF at 991.706 kb on - strand, within ahpF at 991.714 kb on + strand, within ahpF at 991.747 kb on - strand, within ahpF at 991.865 kb on + strand, within ahpF at 991.865 kb on - strand, within ahpF at 991.865 kb on - strand, within ahpF at 991.880 kb on + strand, within ahpF at 991.880 kb on - strand, within ahpF at 991.888 kb on - strand, within ahpF at 991.976 kb on + strand, within ahpF at 991.981 kb on + strand, within ahpF at 991.989 kb on - strand, within ahpF at 991.990 kb on - strand, within ahpF at 992.102 kb on - strand, within ahpF at 992.289 kb on + strand, within ahpF at 992.382 kb on + strand, within ahpF at 992.424 kb on + strand, within ahpF at 992.507 kb on + strand, within ahpF at 992.507 kb on - strand, within ahpF at 992.534 kb on - strand, within ahpF at 992.554 kb on + strand, within ahpF at 992.591 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.596 kb on + strand, within ahpF at 992.604 kb on - strand, within ahpF at 992.604 kb on - strand, within ahpF at 992.663 kb on + strand at 992.673 kb on + strand at 992.812 kb on - strand at 992.854 kb on + strand at 992.999 kb on + strand at 993.050 kb on + strand at 993.050 kb on + strand at 993.058 kb on - strand at 993.062 kb on + strand at 993.087 kb on + strand at 993.134 kb on - strand, within ahpC at 993.136 kb on + strand, within ahpC at 993.171 kb on + strand, within ahpC at 993.230 kb on - strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.257 kb on - strand, within ahpC at 993.356 kb on - strand, within ahpC at 993.395 kb on + strand, within ahpC at 993.441 kb on + strand, within ahpC at 993.549 kb on - strand at 993.590 kb on - strand at 993.682 kb on - strand at 993.684 kb on - strand at 993.784 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 990,433 + -0.5 990,441 - -0.6 990,568 + SO0954 0.20 -0.4 990,568 + SO0954 0.20 +0.6 990,568 + SO0954 0.20 +0.8 990,581 + SO0954 0.23 -0.9 990,658 - SO0954 0.41 -0.3 990,669 - SO0954 0.44 +0.0 990,684 + SO0954 0.47 +0.3 990,726 + SO0954 0.57 -2.4 990,734 - SO0954 0.59 +1.5 990,734 - SO0954 0.59 -1.1 990,768 + SO0954 0.67 -0.6 991,034 + SO0955 0.38 +0.2 991,041 + SO0955 0.41 +0.6 991,057 - SO0955 0.50 +0.7 991,057 - SO0955 0.50 +0.3 991,077 - SO0955 0.61 +1.4 991,212 + +0.2 991,212 + +0.3 991,222 + +0.6 991,230 - +1.2 991,230 - +2.5 991,306 + +0.1 991,376 + ahpF SO0956 0.10 -0.3 991,376 + ahpF SO0956 0.10 -0.4 991,528 + ahpF SO0956 0.20 -0.2 991,536 - ahpF SO0956 0.20 -0.4 991,568 + ahpF SO0956 0.22 +0.4 991,576 - ahpF SO0956 0.23 -0.4 991,576 - ahpF SO0956 0.23 -0.2 991,631 - ahpF SO0956 0.26 -0.8 991,671 + ahpF SO0956 0.29 -0.2 991,672 + ahpF SO0956 0.29 +0.4 991,677 - ahpF SO0956 0.29 +0.4 991,680 - ahpF SO0956 0.29 -0.0 991,698 + ahpF SO0956 0.30 +0.3 991,706 - ahpF SO0956 0.31 -0.7 991,714 + ahpF SO0956 0.32 -0.5 991,747 - ahpF SO0956 0.34 +0.4 991,865 + ahpF SO0956 0.41 -0.3 991,865 - ahpF SO0956 0.41 +0.1 991,865 - ahpF SO0956 0.41 -0.4 991,880 + ahpF SO0956 0.42 +0.9 991,880 - ahpF SO0956 0.42 -1.4 991,888 - ahpF SO0956 0.42 -0.1 991,976 + ahpF SO0956 0.48 -1.4 991,981 + ahpF SO0956 0.48 +0.1 991,989 - ahpF SO0956 0.49 -0.4 991,990 - ahpF SO0956 0.49 -0.1 992,102 - ahpF SO0956 0.56 +0.3 992,289 + ahpF SO0956 0.68 +1.0 992,382 + ahpF SO0956 0.74 -0.2 992,424 + ahpF SO0956 0.76 -2.1 992,507 + ahpF SO0956 0.82 +0.1 992,507 - ahpF SO0956 0.82 -0.4 992,534 - ahpF SO0956 0.83 -0.3 992,554 + ahpF SO0956 0.85 -0.2 992,591 + ahpF SO0956 0.87 -0.0 992,596 + ahpF SO0956 0.87 +0.4 992,596 + ahpF SO0956 0.87 -1.1 992,596 + ahpF SO0956 0.87 -0.6 992,604 - ahpF SO0956 0.88 -1.6 992,604 - ahpF SO0956 0.88 +0.2 992,663 + +0.5 992,673 + -0.3 992,812 - +0.3 992,854 + -0.6 992,999 + -1.5 993,050 + -0.9 993,050 + -0.4 993,058 - -0.1 993,062 + -0.6 993,087 + -2.2 993,134 - ahpC SO0958 0.18 -0.6 993,136 + ahpC SO0958 0.18 -2.7 993,171 + ahpC SO0958 0.24 -0.3 993,230 - ahpC SO0958 0.35 +0.4 993,242 + ahpC SO0958 0.37 -0.9 993,242 + ahpC SO0958 0.37 -1.3 993,250 - ahpC SO0958 0.38 -0.3 993,250 - ahpC SO0958 0.38 -0.1 993,257 - ahpC SO0958 0.39 -1.0 993,356 - ahpC SO0958 0.57 +0.4 993,395 + ahpC SO0958 0.64 -0.1 993,441 + ahpC SO0958 0.72 +1.2 993,549 - -1.8 993,590 - -1.0 993,682 - -1.8 993,684 - +0.1 993,784 + +0.1
Or see this region's nucleotide sequence