Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0348 and SO0349 are separated by 100 nucleotides SO0349 and SO0350 are separated by 216 nucleotides
SO0348: SO0348 - acyltransferase family protein (NCBI ptt file), at 354,700 to 355,602
SO0348
SO0349: SO0349 - magnesium chelatase family protein (NCBI ptt file), at 355,703 to 357,229
SO0349
SO0350: SO0350 - hypothetical protein (NCBI ptt file), at 357,446 to 358,561
SO0350
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 354.769 kb on + strand at 354.868 kb on - strand, within SO0348 at 354.868 kb on - strand, within SO0348 at 354.868 kb on - strand, within SO0348 at 355.045 kb on - strand, within SO0348 at 355.082 kb on + strand, within SO0348 at 355.102 kb on - strand, within SO0348 at 355.102 kb on - strand, within SO0348 at 355.109 kb on - strand, within SO0348 at 355.219 kb on + strand, within SO0348 at 355.313 kb on + strand, within SO0348 at 355.313 kb on + strand, within SO0348 at 355.321 kb on - strand, within SO0348 at 355.321 kb on - strand, within SO0348 at 355.338 kb on + strand, within SO0348 at 355.346 kb on - strand, within SO0348 at 355.360 kb on + strand, within SO0348 at 355.370 kb on + strand, within SO0348 at 355.394 kb on + strand, within SO0348 at 355.394 kb on + strand, within SO0348 at 355.414 kb on - strand, within SO0348 at 355.424 kb on - strand, within SO0348 at 355.529 kb on + strand at 355.529 kb on + strand at 355.529 kb on + strand at 355.529 kb on + strand at 355.532 kb on - strand at 355.537 kb on - strand at 355.537 kb on - strand at 355.632 kb on + strand at 355.640 kb on - strand at 355.709 kb on - strand at 355.719 kb on - strand at 355.765 kb on - strand at 355.765 kb on - strand at 355.765 kb on - strand at 355.803 kb on - strand at 355.803 kb on - strand at 355.803 kb on - strand at 355.812 kb on - strand at 355.886 kb on + strand, within SO0349 at 355.946 kb on + strand, within SO0349 at 355.954 kb on - strand, within SO0349 at 356.029 kb on - strand, within SO0349 at 356.123 kb on + strand, within SO0349 at 356.290 kb on - strand, within SO0349 at 356.290 kb on - strand, within SO0349 at 356.290 kb on - strand, within SO0349 at 356.474 kb on - strand, within SO0349 at 356.485 kb on + strand, within SO0349 at 356.493 kb on - strand, within SO0349 at 356.777 kb on - strand, within SO0349 at 356.782 kb on + strand, within SO0349 at 356.866 kb on + strand, within SO0349 at 356.882 kb on + strand, within SO0349 at 356.923 kb on + strand, within SO0349 at 356.930 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 356.931 kb on - strand, within SO0349 at 357.152 kb on + strand at 357.161 kb on + strand at 357.163 kb on + strand at 357.192 kb on - strand at 357.341 kb on - strand at 357.425 kb on + strand at 357.433 kb on - strand at 357.511 kb on + strand at 357.560 kb on + strand, within SO0350 at 357.577 kb on - strand, within SO0350 at 357.632 kb on + strand, within SO0350 at 357.649 kb on + strand, within SO0350 at 357.649 kb on + strand, within SO0350 at 357.680 kb on - strand, within SO0350 at 357.680 kb on - strand, within SO0350 at 357.757 kb on + strand, within SO0350 at 357.763 kb on + strand, within SO0350 at 357.765 kb on - strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.910 kb on + strand, within SO0350 at 357.918 kb on - strand, within SO0350 at 357.972 kb on - strand, within SO0350 at 358.032 kb on - strand, within SO0350 at 358.176 kb on - strand, within SO0350
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 354,769 + -1.5 354,868 - SO0348 0.19 -1.4 354,868 - SO0348 0.19 -0.1 354,868 - SO0348 0.19 -1.5 355,045 - SO0348 0.38 -1.9 355,082 + SO0348 0.42 -2.6 355,102 - SO0348 0.45 -0.3 355,102 - SO0348 0.45 -2.5 355,109 - SO0348 0.45 +0.5 355,219 + SO0348 0.57 -2.9 355,313 + SO0348 0.68 +0.8 355,313 + SO0348 0.68 -0.9 355,321 - SO0348 0.69 +0.2 355,321 - SO0348 0.69 -2.1 355,338 + SO0348 0.71 -1.7 355,346 - SO0348 0.72 -0.8 355,360 + SO0348 0.73 -2.4 355,370 + SO0348 0.74 -1.7 355,394 + SO0348 0.77 -0.6 355,394 + SO0348 0.77 +0.1 355,414 - SO0348 0.79 -1.2 355,424 - SO0348 0.80 -2.2 355,529 + -1.1 355,529 + -2.1 355,529 + -1.0 355,529 + -2.1 355,532 - -1.4 355,537 - -0.3 355,537 - -2.2 355,632 + -1.5 355,640 - +0.4 355,709 - -0.8 355,719 - +0.3 355,765 - -0.3 355,765 - -0.9 355,765 - +0.4 355,803 - +1.1 355,803 - -0.0 355,803 - -0.4 355,812 - -0.1 355,886 + SO0349 0.12 -0.6 355,946 + SO0349 0.16 -0.3 355,954 - SO0349 0.16 +0.3 356,029 - SO0349 0.21 -0.1 356,123 + SO0349 0.28 +0.2 356,290 - SO0349 0.38 -0.7 356,290 - SO0349 0.38 +0.8 356,290 - SO0349 0.38 -0.2 356,474 - SO0349 0.50 -0.0 356,485 + SO0349 0.51 +0.3 356,493 - SO0349 0.52 +0.5 356,777 - SO0349 0.70 -0.1 356,782 + SO0349 0.71 -0.3 356,866 + SO0349 0.76 +0.4 356,882 + SO0349 0.77 -0.8 356,923 + SO0349 0.80 +0.7 356,930 - SO0349 0.80 +1.6 356,931 - SO0349 0.80 +0.0 356,931 - SO0349 0.80 +0.6 356,931 - SO0349 0.80 +0.5 357,152 + +0.2 357,161 + -0.0 357,163 + +0.5 357,192 - +0.2 357,341 - -0.1 357,425 + +0.5 357,433 - -0.1 357,511 + -0.0 357,560 + SO0350 0.10 +0.8 357,577 - SO0350 0.12 -0.4 357,632 + SO0350 0.17 -0.1 357,649 + SO0350 0.18 +0.4 357,649 + SO0350 0.18 +0.8 357,680 - SO0350 0.21 -0.2 357,680 - SO0350 0.21 -0.5 357,757 + SO0350 0.28 -1.3 357,763 + SO0350 0.28 +0.6 357,765 - SO0350 0.29 -0.2 357,910 + SO0350 0.42 +0.3 357,910 + SO0350 0.42 -0.2 357,910 + SO0350 0.42 +0.3 357,918 - SO0350 0.42 -0.0 357,972 - SO0350 0.47 +0.4 358,032 - SO0350 0.53 +0.0 358,176 - SO0350 0.65 +0.1
Or see this region's nucleotide sequence