Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4690 and SO4692 are separated by 646 nucleotides SO4692 and SO4693 are separated by 9 nucleotides
SO4690: SO4690 - conserved hypothetical protein (NCBI ptt file), at 4,889,105 to 4,890,829
SO4690
SO4692: SO4692 - AcrB/AcrD/AcrF family protein (NCBI ptt file), at 4,891,476 to 4,894,610
SO4692
SO4693: SO4693 - multidrug resistance protein, AcrA/AcrE family (NCBI ptt file), at 4,894,620 to 4,895,768
SO4693
Position (kb)
4891
4892
4893
4894
4895 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4890.476 kb on - strand, within SO4690 at 4890.490 kb on + strand, within SO4690 at 4890.491 kb on - strand, within SO4690 at 4890.491 kb on - strand, within SO4690 at 4890.547 kb on + strand, within SO4690 at 4890.663 kb on + strand at 4890.663 kb on + strand at 4890.668 kb on + strand at 4890.668 kb on + strand at 4890.759 kb on - strand at 4890.813 kb on - strand at 4890.841 kb on - strand at 4890.864 kb on - strand at 4890.940 kb on + strand at 4890.949 kb on + strand at 4891.062 kb on - strand at 4891.095 kb on + strand at 4891.095 kb on + strand at 4891.103 kb on - strand at 4891.128 kb on + strand at 4891.128 kb on + strand at 4891.129 kb on + strand at 4891.139 kb on + strand at 4891.144 kb on + strand at 4891.144 kb on + strand at 4891.144 kb on + strand at 4891.147 kb on - strand at 4891.152 kb on - strand at 4891.164 kb on - strand at 4891.325 kb on + strand at 4891.343 kb on - strand at 4891.348 kb on - strand at 4891.435 kb on + strand at 4891.435 kb on + strand at 4891.443 kb on - strand at 4891.632 kb on + strand at 4891.646 kb on - strand at 4891.735 kb on - strand at 4892.080 kb on + strand, within SO4692 at 4892.161 kb on + strand, within SO4692 at 4892.238 kb on - strand, within SO4692 at 4892.268 kb on - strand, within SO4692 at 4892.286 kb on + strand, within SO4692 at 4892.286 kb on + strand, within SO4692 at 4892.348 kb on + strand, within SO4692 at 4892.356 kb on - strand, within SO4692 at 4892.366 kb on - strand, within SO4692 at 4892.487 kb on - strand, within SO4692 at 4892.487 kb on - strand, within SO4692 at 4892.538 kb on - strand, within SO4692 at 4892.677 kb on + strand, within SO4692 at 4892.693 kb on - strand, within SO4692 at 4892.724 kb on - strand, within SO4692 at 4892.732 kb on - strand, within SO4692 at 4892.757 kb on + strand, within SO4692 at 4892.757 kb on + strand, within SO4692 at 4892.759 kb on - strand, within SO4692 at 4892.993 kb on + strand, within SO4692 at 4893.001 kb on - strand, within SO4692 at 4893.001 kb on - strand, within SO4692 at 4893.001 kb on - strand, within SO4692 at 4893.012 kb on - strand, within SO4692 at 4893.104 kb on - strand, within SO4692 at 4893.123 kb on - strand, within SO4692 at 4893.329 kb on - strand, within SO4692 at 4893.590 kb on - strand, within SO4692 at 4893.595 kb on - strand, within SO4692 at 4893.659 kb on - strand, within SO4692 at 4893.804 kb on - strand, within SO4692 at 4893.806 kb on - strand, within SO4692 at 4893.806 kb on - strand, within SO4692 at 4893.878 kb on + strand, within SO4692 at 4893.878 kb on + strand, within SO4692 at 4893.878 kb on + strand, within SO4692 at 4893.886 kb on - strand, within SO4692 at 4893.886 kb on - strand, within SO4692 at 4894.004 kb on + strand, within SO4692 at 4894.012 kb on - strand, within SO4692 at 4894.012 kb on - strand, within SO4692 at 4894.034 kb on + strand, within SO4692 at 4894.103 kb on + strand, within SO4692 at 4894.149 kb on + strand, within SO4692 at 4894.299 kb on - strand at 4894.340 kb on - strand at 4894.378 kb on + strand at 4894.434 kb on - strand at 4894.442 kb on - strand at 4894.466 kb on + strand at 4894.470 kb on - strand at 4894.474 kb on - strand at 4894.479 kb on - strand at 4894.501 kb on - strand at 4894.617 kb on + strand at 4894.620 kb on - strand at 4894.625 kb on - strand at 4894.625 kb on - strand at 4894.625 kb on - strand at 4894.698 kb on + strand at 4894.708 kb on - strand at 4894.718 kb on + strand at 4894.726 kb on - strand at 4894.726 kb on - strand at 4894.751 kb on + strand, within SO4693 at 4894.751 kb on + strand, within SO4693 at 4894.759 kb on - strand, within SO4693 at 4894.821 kb on - strand, within SO4693 at 4894.821 kb on - strand, within SO4693 at 4894.896 kb on + strand, within SO4693 at 4894.898 kb on + strand, within SO4693 at 4894.921 kb on - strand, within SO4693 at 4895.011 kb on - strand, within SO4693 at 4895.166 kb on + strand, within SO4693 at 4895.237 kb on + strand, within SO4693 at 4895.246 kb on - strand, within SO4693 at 4895.263 kb on - strand, within SO4693 at 4895.305 kb on - strand, within SO4693 at 4895.395 kb on + strand, within SO4693 at 4895.395 kb on + strand, within SO4693 at 4895.395 kb on + strand, within SO4693 at 4895.403 kb on - strand, within SO4693 at 4895.403 kb on - strand, within SO4693 at 4895.412 kb on + strand, within SO4693 at 4895.487 kb on - strand, within SO4693 at 4895.528 kb on - strand, within SO4693 at 4895.592 kb on + strand, within SO4693
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM remove 4,890,476 - SO4690 0.79 +0.7 4,890,490 + SO4690 0.80 +0.6 4,890,491 - SO4690 0.80 -0.2 4,890,491 - SO4690 0.80 -0.3 4,890,547 + SO4690 0.84 +0.4 4,890,663 + -0.3 4,890,663 + +0.7 4,890,668 + +1.1 4,890,668 + +0.6 4,890,759 - +0.8 4,890,813 - +0.0 4,890,841 - +0.0 4,890,864 - +0.1 4,890,940 + -0.3 4,890,949 + +0.5 4,891,062 - -0.2 4,891,095 + -0.4 4,891,095 + +0.0 4,891,103 - -0.7 4,891,128 + -2.8 4,891,128 + -1.0 4,891,129 + -0.3 4,891,139 + +0.5 4,891,144 + +0.1 4,891,144 + -0.1 4,891,144 + -1.3 4,891,147 - -0.3 4,891,152 - +0.8 4,891,164 - +0.3 4,891,325 + -0.1 4,891,343 - +0.3 4,891,348 - +2.4 4,891,435 + -0.2 4,891,435 + +0.1 4,891,443 - -0.1 4,891,632 + -1.0 4,891,646 - -0.9 4,891,735 - -1.3 4,892,080 + SO4692 0.19 -0.9 4,892,161 + SO4692 0.22 -2.5 4,892,238 - SO4692 0.24 -0.8 4,892,268 - SO4692 0.25 +0.3 4,892,286 + SO4692 0.26 -1.4 4,892,286 + SO4692 0.26 +0.4 4,892,348 + SO4692 0.28 -1.1 4,892,356 - SO4692 0.28 -1.4 4,892,366 - SO4692 0.28 -1.0 4,892,487 - SO4692 0.32 -1.2 4,892,487 - SO4692 0.32 -1.2 4,892,538 - SO4692 0.34 -0.0 4,892,677 + SO4692 0.38 -1.4 4,892,693 - SO4692 0.39 -1.9 4,892,724 - SO4692 0.40 -0.5 4,892,732 - SO4692 0.40 -1.5 4,892,757 + SO4692 0.41 +0.7 4,892,757 + SO4692 0.41 -1.2 4,892,759 - SO4692 0.41 +0.5 4,892,993 + SO4692 0.48 -1.1 4,893,001 - SO4692 0.49 -1.6 4,893,001 - SO4692 0.49 -0.3 4,893,001 - SO4692 0.49 -2.4 4,893,012 - SO4692 0.49 -0.0 4,893,104 - SO4692 0.52 -1.3 4,893,123 - SO4692 0.53 -0.1 4,893,329 - SO4692 0.59 -2.0 4,893,590 - SO4692 0.67 -0.0 4,893,595 - SO4692 0.68 -0.7 4,893,659 - SO4692 0.70 -0.5 4,893,804 - SO4692 0.74 -0.8 4,893,806 - SO4692 0.74 -0.7 4,893,806 - SO4692 0.74 -2.3 4,893,878 + SO4692 0.77 +0.5 4,893,878 + SO4692 0.77 -0.5 4,893,878 + SO4692 0.77 -1.7 4,893,886 - SO4692 0.77 +1.5 4,893,886 - SO4692 0.77 -1.2 4,894,004 + SO4692 0.81 -0.5 4,894,012 - SO4692 0.81 -0.5 4,894,012 - SO4692 0.81 -2.2 4,894,034 + SO4692 0.82 -0.7 4,894,103 + SO4692 0.84 -0.3 4,894,149 + SO4692 0.85 -1.3 4,894,299 - -0.8 4,894,340 - -1.1 4,894,378 + -0.7 4,894,434 - -1.5 4,894,442 - -1.0 4,894,466 + -1.2 4,894,470 - -1.0 4,894,474 - -1.3 4,894,479 - -0.4 4,894,501 - -1.5 4,894,617 + -1.4 4,894,620 - -1.0 4,894,625 - -0.9 4,894,625 - -0.1 4,894,625 - +0.5 4,894,698 + -1.0 4,894,708 - -1.2 4,894,718 + -1.5 4,894,726 - -1.5 4,894,726 - -2.0 4,894,751 + SO4693 0.11 -0.7 4,894,751 + SO4693 0.11 -0.3 4,894,759 - SO4693 0.12 +0.2 4,894,821 - SO4693 0.17 -0.5 4,894,821 - SO4693 0.17 +0.3 4,894,896 + SO4693 0.24 -0.8 4,894,898 + SO4693 0.24 -0.7 4,894,921 - SO4693 0.26 -1.0 4,895,011 - SO4693 0.34 -0.6 4,895,166 + SO4693 0.48 -1.5 4,895,237 + SO4693 0.54 -1.1 4,895,246 - SO4693 0.54 -1.4 4,895,263 - SO4693 0.56 -0.6 4,895,305 - SO4693 0.60 -0.9 4,895,395 + SO4693 0.67 -0.9 4,895,395 + SO4693 0.67 -1.3 4,895,395 + SO4693 0.67 -1.5 4,895,403 - SO4693 0.68 -1.2 4,895,403 - SO4693 0.68 -0.8 4,895,412 + SO4693 0.69 -1.3 4,895,487 - SO4693 0.75 -0.2 4,895,528 - SO4693 0.79 -1.4 4,895,592 + SO4693 0.85 -0.8
Or see this region's nucleotide sequence