Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4006 and SO4007 are separated by 39 nucleotides SO4007 and SO4008 overlap by 1 nucleotides
SO4006: SO4006 - predicted chromosome partitioning protein (with smc-like SO4008) (from data) , at 4,147,775 to 4,148,998
SO4006
SO4007: SO4007 - predicted chromosome partitioning protein (with smc-like SO4008) (from data) , at 4,149,038 to 4,149,700
SO4007
SO4008: SO4008 - smc-like chromosome partitioning protein (DUF3584) (from data) , at 4,149,700 to 4,153,350
SO4008
Position (kb)
4149
4150 Strain fitness (log2 ratio)
-2
-1
0
1 at 4148.070 kb on - strand, within SO4006 at 4148.078 kb on - strand, within SO4006 at 4148.082 kb on - strand, within SO4006 at 4148.099 kb on - strand, within SO4006 at 4148.349 kb on + strand, within SO4006 at 4148.489 kb on + strand, within SO4006 at 4148.629 kb on - strand, within SO4006 at 4148.671 kb on + strand, within SO4006 at 4148.671 kb on + strand, within SO4006 at 4148.676 kb on + strand, within SO4006 at 4148.679 kb on - strand, within SO4006 at 4148.779 kb on - strand, within SO4006 at 4148.792 kb on + strand, within SO4006 at 4148.962 kb on + strand at 4148.962 kb on + strand at 4148.970 kb on - strand at 4148.985 kb on - strand at 4148.998 kb on - strand at 4149.016 kb on - strand at 4149.082 kb on + strand at 4149.091 kb on - strand at 4149.328 kb on + strand, within SO4007 at 4149.329 kb on + strand, within SO4007 at 4149.411 kb on - strand, within SO4007 at 4149.440 kb on - strand, within SO4007 at 4149.557 kb on - strand, within SO4007 at 4149.684 kb on - strand at 4149.723 kb on - strand at 4149.825 kb on + strand at 4149.825 kb on - strand at 4149.984 kb on - strand at 4150.065 kb on + strand, within SO4008 at 4150.070 kb on + strand, within SO4008 at 4150.078 kb on - strand, within SO4008 at 4150.078 kb on - strand, within SO4008 at 4150.078 kb on - strand, within SO4008 at 4150.078 kb on - strand, within SO4008 at 4150.079 kb on + strand, within SO4008 at 4150.123 kb on + strand, within SO4008 at 4150.131 kb on - strand, within SO4008 at 4150.131 kb on - strand, within SO4008 at 4150.146 kb on + strand, within SO4008 at 4150.258 kb on - strand, within SO4008 at 4150.630 kb on - strand, within SO4008
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM remove 4,148,070 - SO4006 0.24 -0.8 4,148,078 - SO4006 0.25 -1.0 4,148,082 - SO4006 0.25 -1.4 4,148,099 - SO4006 0.26 +0.2 4,148,349 + SO4006 0.47 -0.2 4,148,489 + SO4006 0.58 -0.5 4,148,629 - SO4006 0.70 -0.4 4,148,671 + SO4006 0.73 -1.4 4,148,671 + SO4006 0.73 -0.0 4,148,676 + SO4006 0.74 +0.7 4,148,679 - SO4006 0.74 -1.2 4,148,779 - SO4006 0.82 +0.1 4,148,792 + SO4006 0.83 +0.0 4,148,962 + -0.7 4,148,962 + -0.2 4,148,970 - -1.2 4,148,985 - -0.7 4,148,998 - +0.1 4,149,016 - +0.3 4,149,082 + -0.9 4,149,091 - -0.9 4,149,328 + SO4007 0.44 -0.6 4,149,329 + SO4007 0.44 +0.9 4,149,411 - SO4007 0.56 -1.3 4,149,440 - SO4007 0.61 -0.8 4,149,557 - SO4007 0.78 -0.9 4,149,684 - +0.2 4,149,723 - -0.4 4,149,825 + +0.0 4,149,825 - +1.5 4,149,984 - -0.2 4,150,065 + SO4008 0.10 -0.3 4,150,070 + SO4008 0.10 -0.6 4,150,078 - SO4008 0.10 +0.4 4,150,078 - SO4008 0.10 -0.4 4,150,078 - SO4008 0.10 -0.3 4,150,078 - SO4008 0.10 -0.8 4,150,079 + SO4008 0.10 -1.8 4,150,123 + SO4008 0.12 -0.2 4,150,131 - SO4008 0.12 -0.7 4,150,131 - SO4008 0.12 +0.7 4,150,146 + SO4008 0.12 -0.2 4,150,258 - SO4008 0.15 -0.7 4,150,630 - SO4008 0.25 +0.5
Or see this region's nucleotide sequence