Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3987 and arcA are separated by 582 nucleotides arcA and SO3990 are separated by 312 nucleotides
SO3987: SO3987 - conserved hypothetical protein (NCBI ptt file), at 4,124,984 to 4,125,418
SO3987
SO3988: arcA - aerobic respiration control protein ArcA (NCBI ptt file), at 4,126,001 to 4,126,717
arcA
SO3990: SO3990 - dipeptidyl peptidase IV (NCBI ptt file), at 4,127,030 to 4,129,321
SO3990
Position (kb) 4126
4127 Strain fitness (log2 ratio) -2
-1
0
1 at 4125.004 kb on - strand at 4125.005 kb on + strand at 4125.028 kb on - strand, within SO3987 at 4125.076 kb on + strand, within SO3987 at 4125.076 kb on + strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.088 kb on + strand, within SO3987 at 4125.088 kb on + strand, within SO3987 at 4125.094 kb on - strand, within SO3987 at 4125.103 kb on - strand, within SO3987 at 4125.171 kb on + strand, within SO3987 at 4125.179 kb on - strand, within SO3987 at 4125.179 kb on - strand, within SO3987 at 4125.209 kb on + strand, within SO3987 at 4125.217 kb on - strand, within SO3987 at 4125.262 kb on - strand, within SO3987 at 4125.264 kb on - strand, within SO3987 at 4125.288 kb on + strand, within SO3987 at 4125.288 kb on + strand, within SO3987 at 4125.296 kb on - strand, within SO3987 at 4125.296 kb on - strand, within SO3987 at 4125.381 kb on + strand at 4125.446 kb on + strand at 4125.451 kb on + strand at 4125.655 kb on - strand at 4125.656 kb on - strand at 4125.675 kb on - strand at 4125.700 kb on + strand at 4125.700 kb on + strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.710 kb on + strand at 4125.715 kb on - strand at 4125.788 kb on + strand at 4125.788 kb on + strand at 4125.834 kb on + strand at 4125.834 kb on + strand at 4125.842 kb on + strand at 4125.842 kb on + strand at 4125.842 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.863 kb on - strand at 4125.863 kb on - strand at 4125.877 kb on + strand at 4125.900 kb on + strand at 4126.349 kb on + strand, within arcA at 4126.678 kb on + strand at 4126.931 kb on - strand at 4127.103 kb on - strand at 4127.103 kb on - strand at 4127.162 kb on - strand at 4127.283 kb on + strand, within SO3990 at 4127.285 kb on + strand, within SO3990 at 4127.388 kb on - strand, within SO3990 at 4127.411 kb on + strand, within SO3990 at 4127.474 kb on + strand, within SO3990 at 4127.528 kb on + strand, within SO3990 at 4127.575 kb on - strand, within SO3990 at 4127.629 kb on + strand, within SO3990 at 4127.637 kb on - strand, within SO3990
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM remove 4,125,004 - +1.0 4,125,005 + -0.4 4,125,028 - SO3987 0.10 -0.2 4,125,076 + SO3987 0.21 -0.1 4,125,076 + SO3987 0.21 +0.2 4,125,084 - SO3987 0.23 +0.1 4,125,084 - SO3987 0.23 -0.5 4,125,084 - SO3987 0.23 +0.1 4,125,084 - SO3987 0.23 +0.6 4,125,084 - SO3987 0.23 +0.8 4,125,084 - SO3987 0.23 -0.1 4,125,088 + SO3987 0.24 +0.4 4,125,088 + SO3987 0.24 -0.1 4,125,094 - SO3987 0.25 +0.1 4,125,103 - SO3987 0.27 +0.1 4,125,171 + SO3987 0.43 +0.1 4,125,179 - SO3987 0.45 +0.3 4,125,179 - SO3987 0.45 -0.7 4,125,209 + SO3987 0.52 +0.3 4,125,217 - SO3987 0.54 -0.2 4,125,262 - SO3987 0.64 -0.4 4,125,264 - SO3987 0.64 +0.4 4,125,288 + SO3987 0.70 -0.9 4,125,288 + SO3987 0.70 -1.1 4,125,296 - SO3987 0.72 +1.1 4,125,296 - SO3987 0.72 +0.4 4,125,381 + +0.4 4,125,446 + -0.9 4,125,451 + +0.4 4,125,655 - -1.2 4,125,656 - -1.3 4,125,675 - -1.0 4,125,700 + +0.4 4,125,700 + -0.1 4,125,708 - +0.6 4,125,708 - +0.2 4,125,710 + -0.1 4,125,715 - +0.2 4,125,788 + -0.4 4,125,788 + +0.0 4,125,834 + -0.9 4,125,834 + -0.3 4,125,842 + -1.0 4,125,842 + -1.2 4,125,842 + -1.0 4,125,855 + -0.8 4,125,855 + -1.0 4,125,855 + -2.0 4,125,855 + -1.2 4,125,855 + -1.0 4,125,863 - -0.5 4,125,863 - -1.5 4,125,877 + -1.7 4,125,900 + -1.1 4,126,349 + arcA SO3988 0.49 -2.2 4,126,678 + -0.9 4,126,931 - +0.7 4,127,103 - -1.1 4,127,103 - -0.1 4,127,162 - +0.3 4,127,283 + SO3990 0.11 -0.0 4,127,285 + SO3990 0.11 +0.4 4,127,388 - SO3990 0.16 +0.1 4,127,411 + SO3990 0.17 +0.2 4,127,474 + SO3990 0.19 -0.0 4,127,528 + SO3990 0.22 +0.1 4,127,575 - SO3990 0.24 -2.1 4,127,629 + SO3990 0.26 +0.8 4,127,637 - SO3990 0.26 +0.2
Or see this region's nucleotide sequence