Strain Fitness in Shewanella oneidensis MR-1 around SO3181

Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 40 mM
3,318,912	-				+0.7
3,319,038	+				+0.4
3,319,077	+		SO3180	0.12	-0.2
3,319,080	+		SO3180	0.12	-0.1
3,319,080	+		SO3180	0.12	-0.9
3,319,080	+		SO3180	0.12	+1.1
3,319,080	+		SO3180	0.12	-0.4
3,319,085	-		SO3180	0.12	-1.7
3,319,085	-		SO3180	0.12	+0.0
3,319,085	-		SO3180	0.12	-0.0
3,319,088	-		SO3180	0.13	-0.1
3,319,088	-		SO3180	0.13	+0.5
3,319,088	-		SO3180	0.13	-1.5
3,319,088	-		SO3180	0.13	+1.0
3,319,088	-		SO3180	0.13	-0.4
3,319,130	-		SO3180	0.18	+0.1
3,319,185	+		SO3180	0.24	+0.6
3,319,205	-		SO3180	0.26	+0.9
3,319,225	+		SO3180	0.28	-2.1
3,319,226	+		SO3180	0.28	-1.0
3,319,233	-		SO3180	0.29	-0.1
3,319,233	-		SO3180	0.29	-0.8
3,319,233	-		SO3180	0.29	-0.1
3,319,235	+		SO3180	0.29	-0.9
3,319,235	+		SO3180	0.29	+0.4
3,319,243	-		SO3180	0.30	-0.4
3,319,243	-		SO3180	0.30	-1.0
3,319,243	-		SO3180	0.30	-0.4
3,319,243	-		SO3180	0.30	+1.4
3,319,243	-		SO3180	0.30	-0.8
3,319,243	-		SO3180	0.30	-1.6
3,319,247	+		SO3180	0.31	-0.3
3,319,248	-		SO3180	0.31	-1.0
3,319,254	+		SO3180	0.31	+0.9
3,319,254	-		SO3180	0.31	-1.6
3,319,254	-		SO3180	0.31	-1.1
3,319,254	-		SO3180	0.31	+0.0
3,319,262	-		SO3180	0.32	-0.5
3,319,262	-		SO3180	0.32	+0.9
3,319,276	-		SO3180	0.34	-0.4
3,319,281	-		SO3180	0.34	-2.0
3,319,375	+		SO3180	0.45	+0.9
3,319,383	-		SO3180	0.46	-0.3
3,319,383	-		SO3180	0.46	-1.4
3,319,488	+		SO3180	0.57	-0.4
3,319,490	-		SO3180	0.58	-0.7
3,319,549	-		SO3180	0.64	+0.6
3,319,561	+		SO3180	0.66	-0.4
3,319,569	-		SO3180	0.66	-0.7
3,319,570	-		SO3180	0.67	-1.0
3,319,574	+		SO3180	0.67	-0.4
3,319,574	+		SO3180	0.67	+0.7
3,319,582	-		SO3180	0.68	-0.4
3,319,582	-		SO3180	0.68	-0.1
3,319,592	+		SO3180	0.69	-0.7
3,319,607	+		SO3180	0.71	-0.1
3,319,609	+		SO3180	0.71	-0.0
3,319,609	+		SO3180	0.71	-1.3
3,319,609	+		SO3180	0.71	-1.0
3,319,609	+		SO3180	0.71	-0.6
3,319,609	+		SO3180	0.71	-0.2
3,319,609	+		SO3180	0.71	+0.6
3,319,609	+		SO3180	0.71	-0.4
3,319,609	+		SO3180	0.71	+0.4
3,319,609	+		SO3180	0.71	+0.1
3,319,609	+		SO3180	0.71	-0.3
3,319,609	+		SO3180	0.71	-1.6
3,319,609	+		SO3180	0.71	+0.1
3,319,609	+		SO3180	0.71	-1.1
3,319,609	+		SO3180	0.71	+0.8
3,319,609	+		SO3180	0.71	+1.7
3,319,609	+		SO3180	0.71	-0.9
3,319,609	+		SO3180	0.71	+0.9
3,319,609	+		SO3180	0.71	-0.3
3,319,609	+		SO3180	0.71	-0.5
3,319,609	+		SO3180	0.71	-1.0
3,319,609	+		SO3180	0.71	+0.7
3,319,609	+		SO3180	0.71	-0.4
3,319,609	+		SO3180	0.71	-1.1
3,319,609	+		SO3180	0.71	+0.1
3,319,609	+		SO3180	0.71	-2.1
3,319,609	+		SO3180	0.71	-0.6
3,319,609	+		SO3180	0.71	-1.3
3,319,612	+		SO3180	0.71	-0.3
3,319,617	-		SO3180	0.72	-0.2
3,319,617	-		SO3180	0.72	-0.5
3,319,617	-		SO3180	0.72	-1.1
3,319,617	-		SO3180	0.72	-0.8
3,319,617	-		SO3180	0.72	-0.5
3,319,617	-		SO3180	0.72	-1.0
3,319,617	-		SO3180	0.72	-0.5
3,319,617	-		SO3180	0.72	-1.7
3,319,617	-		SO3180	0.72	-0.4
3,319,617	-		SO3180	0.72	-0.2
3,319,617	-		SO3180	0.72	-0.9
3,319,617	-		SO3180	0.72	-0.3
3,319,617	-		SO3180	0.72	-1.8
3,319,617	-		SO3180	0.72	-0.7
3,319,617	-		SO3180	0.72	+0.6
3,319,617	-		SO3180	0.72	-1.3
3,319,617	-		SO3180	0.72	-0.3
3,319,617	-		SO3180	0.72	-0.1
3,319,617	-		SO3180	0.72	-0.5
3,319,617	-		SO3180	0.72	-2.4
3,319,617	-		SO3180	0.72	-0.7
3,319,617	-		SO3180	0.72	-0.4
3,319,617	-		SO3180	0.72	-1.4
3,319,617	-		SO3180	0.72	-0.1
3,319,617	-		SO3180	0.72	-0.2
3,319,617	-		SO3180	0.72	-0.6
3,319,617	-		SO3180	0.72	-0.4
3,319,617	-		SO3180	0.72	-1.4
3,319,617	-		SO3180	0.72	-0.4
3,319,617	-		SO3180	0.72	-0.9
3,319,617	-		SO3180	0.72	+0.6
3,319,617	-		SO3180	0.72	+0.1
3,319,617	-		SO3180	0.72	-0.3
3,319,617	-		SO3180	0.72	-1.4
3,319,617	-		SO3180	0.72	-0.4
3,319,617	-		SO3180	0.72	+0.3
3,319,617	-		SO3180	0.72	-1.7
3,319,617	-		SO3180	0.72	+0.4
3,319,617	-		SO3180	0.72	+0.1
3,319,617	-		SO3180	0.72	+0.5
3,319,617	-		SO3180	0.72	-0.1
3,319,617	-		SO3180	0.72	-0.8
3,319,617	-		SO3180	0.72	-1.1
3,319,617	-		SO3180	0.72	-1.9
3,319,617	-		SO3180	0.72	-0.8
3,319,617	-		SO3180	0.72	+0.4
3,319,617	-		SO3180	0.72	-0.9
3,319,617	-		SO3180	0.72	-0.0
3,319,627	+		SO3180	0.73	-0.5
3,319,635	-		SO3180	0.74	-0.2
3,319,657	+		SO3180	0.76	+0.7
3,319,784	-				-1.4
3,319,792	+				-0.3
3,319,800	-				-0.9
3,319,805	-				-0.7
3,319,813	-				-1.4
3,319,838	-				-0.4
3,319,841	+				-0.4
3,319,841	+				-0.4
3,319,843	+				-0.7
3,319,843	+				+1.2
3,319,843	+				+0.6
3,319,849	-				-0.0
3,319,849	-				-0.4
3,319,849	-				-0.3
3,319,849	-				-1.1
3,319,849	-				-0.4
3,319,849	-				+0.4
3,319,849	-				-1.6
3,319,849	-				-0.3
3,319,849	-				+1.0
3,319,849	-				+0.9
3,319,851	-				-1.4
3,319,887	+				+0.2
3,319,900	+				-0.4
3,319,911	+				+0.1
3,319,927	-				+0.6
3,319,939	+				-2.6
3,320,025	-		SO3181	0.11	-1.3
3,320,179	-		SO3181	0.21	-1.2
3,320,318	-		SO3181	0.31	-1.5
3,320,520	-		SO3181	0.44	-1.3
3,320,719	-		SO3181	0.57	-1.4
3,320,736	-		SO3181	0.58	+0.1
3,321,451	+		SO3182	0.16	-0.3
3,321,473	+		SO3182	0.21	+0.9
3,321,483	+		SO3182	0.24	-0.4
3,321,497	-		SO3182	0.27	-0.4
3,321,519	+		SO3182	0.32	+0.7
3,321,564	-		SO3182	0.42	-1.0
3,321,566	-		SO3182	0.43	-1.2
3,321,570	+		SO3182	0.44	-1.8
3,321,576	-		SO3182	0.45	-0.6
3,321,577	+		SO3182	0.45	-0.3
3,321,599	-		SO3182	0.51	+0.3
3,321,602	+		SO3182	0.51	-0.9
3,321,602	+		SO3182	0.51	-0.1
3,321,609	+		SO3182	0.53	-0.4
3,321,610	-		SO3182	0.53	+0.1
3,321,610	-		SO3182	0.53	+0.9
3,321,610	-		SO3182	0.53	-1.6
3,321,625	+		SO3182	0.57	-0.2
3,321,625	+		SO3182	0.57	+0.1
3,321,625	+		SO3182	0.57	-1.1
3,321,625	+		SO3182	0.57	+0.1
3,321,625	+		SO3182	0.57	-0.4
3,321,625	+		SO3182	0.57	-0.8
3,321,626	-		SO3182	0.57	-1.4
3,321,628	+		SO3182	0.57	+0.1
3,321,631	-		SO3182	0.58	-2.1
3,321,633	-		SO3182	0.59	-0.6
3,321,633	-		SO3182	0.59	+0.3
3,321,633	-		SO3182	0.59	+0.5
3,321,633	-		SO3182	0.59	-1.1
3,321,633	-		SO3182	0.59	-0.1
3,321,633	-		SO3182	0.59	-0.3
3,321,633	-		SO3182	0.59	+0.0
3,321,633	-		SO3182	0.59	-0.4
3,321,636	-		SO3182	0.59	-0.0
3,321,676	+		SO3182	0.69	-1.1
3,321,684	-		SO3182	0.70	+0.7
3,321,723	+		SO3182	0.79	+0.3
3,321,731	-		SO3182	0.81	-1.6
3,321,738	-		SO3182	0.83	-1.1
3,321,842	+				-1.3
3,321,847	-				-0.0
3,321,850	-				-0.9
3,321,903	-		SO3183	0.12	-0.4
3,321,951	+		SO3183	0.17	+0.4
3,321,951	+		SO3183	0.17	+0.7
3,321,951	+		SO3183	0.17	+0.4
3,321,951	+		SO3183	0.17	-0.3
3,321,951	+		SO3183	0.17	-1.1
3,321,951	+		SO3183	0.17	+0.4
3,321,951	+		SO3183	0.17	+0.5
3,321,951	+		SO3183	0.17	-0.4
3,321,951	+		SO3183	0.17	-0.3
3,321,951	+		SO3183	0.17	-0.7
3,321,951	-		SO3183	0.17	-0.2
3,321,953	+		SO3183	0.17	+0.1
3,321,953	+		SO3183	0.17	-0.4
3,321,956	-		SO3183	0.17	+0.2
3,321,956	-		SO3183	0.17	+1.0
3,321,959	-		SO3183	0.18	-0.8
3,321,959	-		SO3183	0.18	-0.5
3,321,959	-		SO3183	0.18	-1.4
3,321,959	-		SO3183	0.18	-0.2
3,321,959	-		SO3183	0.18	+0.2
3,321,959	-		SO3183	0.18	+0.2
3,321,959	-		SO3183	0.18	-0.6
3,321,959	-		SO3183	0.18	-1.1
3,321,959	-		SO3183	0.18	-0.9
3,321,959	-		SO3183	0.18	+0.3
3,321,959	-		SO3183	0.18	-1.5
3,321,959	-		SO3183	0.18	-1.4
3,321,961	+		SO3183	0.18	+0.6
3,321,961	-		SO3183	0.18	-0.1
3,321,961	-		SO3183	0.18	-2.5
3,321,961	-		SO3183	0.18	-0.7
3,321,961	-		SO3183	0.18	-0.5
3,321,961	-		SO3183	0.18	-2.2
3,321,961	-		SO3183	0.18	+1.2
3,321,961	-		SO3183	0.18	-1.4
3,321,961	-		SO3183	0.18	+0.2
3,321,961	-		SO3183	0.18	-0.3
3,321,961	-		SO3183	0.18	-1.4
3,321,961	-		SO3183	0.18	-1.5
3,321,967	-		SO3183	0.19	-1.6
3,321,967	-		SO3183	0.19	-1.6
3,321,969	-		SO3183	0.19	-0.9
3,321,969	-		SO3183	0.19	+0.1
3,321,969	-		SO3183	0.19	-0.0
3,322,051	+		SO3183	0.27	-2.1
3,322,059	-		SO3183	0.28	-0.9
3,322,059	-		SO3183	0.28	-0.4
3,322,059	-		SO3183	0.28	-0.4
3,322,108	-		SO3183	0.33	+0.5
3,322,140	-		SO3183	0.37	-1.0
3,322,140	-		SO3183	0.37	-0.6
3,322,190	-		SO3183	0.42	+0.1
3,322,213	+		SO3183	0.44	+0.0
3,322,216	-		SO3183	0.45	-1.5
3,322,216	-		SO3183	0.45	-1.0
3,322,218	+		SO3183	0.45	+0.1
3,322,218	+		SO3183	0.45	+0.3
3,322,218	+		SO3183	0.45	-0.3
3,322,218	+		SO3183	0.45	-0.8
3,322,226	-		SO3183	0.46	-0.2
3,322,226	-		SO3183	0.46	+0.1
3,322,226	-		SO3183	0.46	+0.6
3,322,226	-		SO3183	0.46	-0.2
3,322,226	-		SO3183	0.46	-0.2
3,322,226	-		SO3183	0.46	-0.6
3,322,226	-		SO3183	0.46	-0.4
3,322,226	-		SO3183	0.46	-1.3
3,322,226	-		SO3183	0.46	-0.7
3,322,226	-		SO3183	0.46	-2.0
3,322,226	-		SO3183	0.46	-0.0
3,322,226	-		SO3183	0.46	-2.2
3,322,226	-		SO3183	0.46	-0.7
3,322,226	-		SO3183	0.46	+0.3
3,322,226	-		SO3183	0.46	-1.5
3,322,226	-		SO3183	0.46	-0.2
3,322,226	-		SO3183	0.46	-0.1
3,322,226	-		SO3183	0.46	-0.1
3,322,295	+		SO3183	0.53	-0.3
3,322,303	-		SO3183	0.54	-1.5
3,322,303	-		SO3183	0.54	+0.3
3,322,351	+		SO3183	0.59	-0.3
3,322,352	+		SO3183	0.59	-0.9