Strain Fitness in Shewanella oneidensis MR-1 around SO3179

Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 40 mM
3,316,222	+				-0.8
3,316,279	-				-0.0
3,316,281	-				+0.5
3,316,288	+		SO3178	0.11	-0.1
3,316,296	-		SO3178	0.11	-0.7
3,316,365	+		SO3178	0.19	-1.4
3,316,396	+		SO3178	0.22	-1.0
3,316,396	+		SO3178	0.22	+0.9
3,316,396	+		SO3178	0.22	+0.1
3,316,396	+		SO3178	0.22	-0.9
3,316,396	+		SO3178	0.22	-0.2
3,316,404	-		SO3178	0.22	-0.9
3,316,404	-		SO3178	0.22	+0.0
3,316,498	-		SO3178	0.32	+0.2
3,316,567	+		SO3178	0.39	+0.7
3,316,568	+		SO3178	0.39	+0.7
3,316,568	+		SO3178	0.39	-1.1
3,316,568	+		SO3178	0.39	+0.2
3,316,568	-		SO3178	0.39	-1.1
3,316,576	-		SO3178	0.40	+0.5
3,316,576	-		SO3178	0.40	+0.6
3,316,576	-		SO3178	0.40	-0.7
3,316,576	-		SO3178	0.40	-0.2
3,316,576	-		SO3178	0.40	+0.4
3,316,576	-		SO3178	0.40	+0.6
3,316,592	-		SO3178	0.42	-0.3
3,316,595	+		SO3178	0.42	+0.1
3,316,595	+		SO3178	0.42	+0.4
3,316,678	+		SO3178	0.51	+0.8
3,316,679	+		SO3178	0.51	-0.0
3,316,679	+		SO3178	0.51	+0.2
3,316,679	+		SO3178	0.51	+0.6
3,316,679	+		SO3178	0.51	-0.2
3,316,679	+		SO3178	0.51	+0.6
3,316,679	-		SO3178	0.51	-1.1
3,316,679	-		SO3178	0.51	+0.2
3,316,686	-		SO3178	0.51	-0.4
3,316,686	-		SO3178	0.51	+0.0
3,316,686	-		SO3178	0.51	-0.1
3,316,687	-		SO3178	0.51	+0.4
3,316,687	-		SO3178	0.51	+1.5
3,316,687	-		SO3178	0.51	-0.9
3,316,687	-		SO3178	0.51	-1.6
3,316,687	-		SO3178	0.51	-0.4
3,316,687	-		SO3178	0.51	-0.1
3,316,687	-		SO3178	0.51	+0.1
3,316,687	-		SO3178	0.51	-0.4
3,316,687	-		SO3178	0.51	-0.2
3,316,693	+		SO3178	0.52	-1.7
3,316,693	+		SO3178	0.52	+0.7
3,316,693	+		SO3178	0.52	+0.8
3,316,693	+		SO3178	0.52	-0.3
3,316,693	+		SO3178	0.52	-0.4
3,316,693	+		SO3178	0.52	+0.4
3,316,693	+		SO3178	0.52	-0.5
3,316,693	-		SO3178	0.52	+0.1
3,316,693	-		SO3178	0.52	+0.2
3,316,694	-		SO3178	0.52	-0.2
3,316,701	-		SO3178	0.53	-0.4
3,316,701	-		SO3178	0.53	-1.4
3,316,701	-		SO3178	0.53	+0.1
3,316,702	-		SO3178	0.53	-1.2
3,316,702	-		SO3178	0.53	+0.5
3,316,718	+		SO3178	0.55	-0.4
3,316,718	+		SO3178	0.55	+0.4
3,316,730	+		SO3178	0.56	-1.4
3,316,733	-		SO3178	0.56	+0.3
3,316,738	-		SO3178	0.57	-0.3
3,316,740	+		SO3178	0.57	-0.9
3,316,740	+		SO3178	0.57	-1.4
3,316,740	+		SO3178	0.57	+0.5
3,316,740	+		SO3178	0.57	-0.3
3,316,740	+		SO3178	0.57	+0.1
3,316,740	+		SO3178	0.57	-1.3
3,316,740	+		SO3178	0.57	+0.1
3,316,740	+		SO3178	0.57	-1.2
3,316,748	-		SO3178	0.58	+0.3
3,316,748	-		SO3178	0.58	-0.5
3,316,748	-		SO3178	0.58	-0.3
3,316,748	-		SO3178	0.58	-0.7
3,316,748	-		SO3178	0.58	-0.2
3,316,750	+		SO3178	0.58	-1.1
3,316,750	+		SO3178	0.58	+0.1
3,316,750	+		SO3178	0.58	+0.6
3,316,758	-		SO3178	0.59	-0.8
3,316,758	-		SO3178	0.59	-0.1
3,316,758	-		SO3178	0.59	+0.4
3,316,758	-		SO3178	0.59	-1.1
3,316,758	-		SO3178	0.59	-0.0
3,316,758	-		SO3178	0.59	-0.6
3,316,765	-		SO3178	0.59	-0.0
3,316,765	-		SO3178	0.59	+0.9
3,316,765	-		SO3178	0.59	+0.5
3,316,768	+		SO3178	0.60	-0.1
3,316,768	+		SO3178	0.60	-0.0
3,316,776	-		SO3178	0.61	-0.7
3,316,776	-		SO3178	0.61	-0.4
3,316,776	-		SO3178	0.61	-0.5
3,316,776	-		SO3178	0.61	-0.2
3,316,776	-		SO3178	0.61	+0.7
3,316,776	-		SO3178	0.61	+0.3
3,316,778	+		SO3178	0.61	-0.7
3,316,778	+		SO3178	0.61	+0.1
3,316,801	+		SO3178	0.63	+0.2
3,316,913	-		SO3178	0.75	+0.0
3,316,913	-		SO3178	0.75	+0.6
3,316,913	-		SO3178	0.75	-0.3
3,316,913	-		SO3178	0.75	-1.2
3,316,930	-		SO3178	0.76	+0.3
3,316,930	-		SO3178	0.76	-0.0
3,316,932	+		SO3178	0.76	+0.1
3,316,940	-		SO3178	0.77	-0.3
3,316,957	+		SO3178	0.79	+1.5
3,316,965	-		SO3178	0.80	-2.4
3,316,965	-		SO3178	0.80	+0.5
3,316,982	+		SO3178	0.82	+0.3
3,316,991	+		SO3178	0.83	-0.1
3,316,991	+		SO3178	0.83	-1.0
3,316,991	+		SO3178	0.83	-0.5
3,316,991	+		SO3178	0.83	-1.1
3,316,991	+		SO3178	0.83	+0.2
3,316,991	+		SO3178	0.83	+0.6
3,316,999	-		SO3178	0.83	-0.9
3,316,999	-		SO3178	0.83	-0.2
3,316,999	-		SO3178	0.83	+0.2
3,316,999	-		SO3178	0.83	+0.4
3,316,999	-		SO3178	0.83	-1.4
3,316,999	-		SO3178	0.83	-1.3
3,316,999	-		SO3178	0.83	-1.5
3,316,999	-		SO3178	0.83	-0.6
3,316,999	-		SO3178	0.83	-0.1
3,316,999	-		SO3178	0.83	-1.1
3,316,999	-		SO3178	0.83	-0.2
3,317,007	+		SO3178	0.84	-0.4
3,317,007	+		SO3178	0.84	+1.1
3,317,007	+		SO3178	0.84	+0.0
3,317,007	+		SO3178	0.84	-0.8
3,317,007	+		SO3178	0.84	+0.7
3,317,007	+		SO3178	0.84	+0.1
3,317,007	+		SO3178	0.84	-1.8
3,317,015	-		SO3178	0.85	-0.4
3,317,017	-		SO3178	0.85	-0.2
3,317,025	-		SO3178	0.86	-0.3
3,317,025	-		SO3178	0.86	-0.8
3,317,025	-		SO3178	0.86	-1.2
3,317,025	-		SO3178	0.86	-1.4
3,317,033	-		SO3178	0.87	-0.7
3,317,049	+		SO3178	0.88	+0.6
3,317,050	+		SO3178	0.89	-0.9
3,317,059	+		SO3178	0.89	+0.4
3,317,080	+				-0.3
3,317,082	+				-1.4
3,317,091	+				+0.0
3,317,099	-				-0.3
3,317,104	+				-0.3
3,317,106	+				+1.3
3,317,106	+				+1.9
3,317,106	+				+1.0
3,317,106	+				-1.6
3,317,106	+				-0.4
3,317,106	+				+0.2
3,317,114	-				-0.4
3,317,114	-				-0.6
3,317,114	-				-1.1
3,317,114	-				-0.0
3,317,114	-				-0.5
3,317,114	-				+0.5
3,317,114	-				+0.1
3,317,114	-				-0.0
3,317,114	-				-0.4
3,317,114	-				-0.7
3,317,114	-				-0.2
3,317,114	-				+0.2
3,317,114	-				+0.3
3,317,114	-				-1.7
3,317,114	-				+0.0
3,317,114	-				-1.4
3,317,143	-				+0.8
3,317,151	-				-0.3
3,317,210	+				-0.9
3,317,224	-				-0.9
3,317,286	-				-0.5
3,317,288	+				-1.1
3,317,288	+				-1.7
3,317,289	+				+0.4
3,317,296	-				+0.6
3,317,296	-				-1.6
3,317,296	-				+0.6
3,317,314	-		SO3179	0.11	+0.1
3,317,323	-		SO3179	0.11	-0.1
3,317,330	+		SO3179	0.12	-1.9
3,317,333	+		SO3179	0.12	-0.6
3,317,333	+		SO3179	0.12	+0.3
3,317,333	+		SO3179	0.12	+0.1
3,317,333	+		SO3179	0.12	-1.5
3,317,333	+		SO3179	0.12	-0.0
3,317,333	+		SO3179	0.12	+0.1
3,317,338	-		SO3179	0.13	-1.6
3,317,339	-		SO3179	0.13	-0.7
3,317,341	-		SO3179	0.13	-0.7
3,317,341	-		SO3179	0.13	-1.5
3,317,341	-		SO3179	0.13	-0.0
3,317,341	-		SO3179	0.13	+0.3
3,317,341	-		SO3179	0.13	-0.2
3,317,341	-		SO3179	0.13	-0.9
3,317,341	-		SO3179	0.13	-0.8
3,317,341	-		SO3179	0.13	-1.1
3,317,341	-		SO3179	0.13	-0.6
3,317,341	-		SO3179	0.13	-2.0
3,317,341	-		SO3179	0.13	-0.7
3,317,431	-		SO3179	0.20	-1.6
3,317,558	-		SO3179	0.30	+0.7
3,317,558	-		SO3179	0.30	+0.1
3,317,670	-		SO3179	0.39	+1.7
3,317,670	-		SO3179	0.39	-0.7
3,317,672	+		SO3179	0.39	+0.5
3,317,672	+		SO3179	0.39	+1.7
3,317,672	+		SO3179	0.39	+1.7
3,317,672	+		SO3179	0.39	-0.6
3,317,672	+		SO3179	0.39	-1.1
3,317,672	+		SO3179	0.39	-1.9
3,317,672	+		SO3179	0.39	+0.7
3,317,672	+		SO3179	0.39	+0.5
3,317,672	+		SO3179	0.39	-0.4
3,317,672	+		SO3179	0.39	-0.4
3,317,672	+		SO3179	0.39	-1.8
3,317,672	+		SO3179	0.39	+1.1
3,317,680	-		SO3179	0.40	-0.7
3,317,680	-		SO3179	0.40	-1.2
3,317,680	-		SO3179	0.40	-0.7
3,317,680	-		SO3179	0.40	-1.2
3,317,680	-		SO3179	0.40	+0.4
3,317,680	-		SO3179	0.40	-0.7
3,317,680	-		SO3179	0.40	-0.7
3,317,680	-		SO3179	0.40	-0.9
3,317,680	-		SO3179	0.40	-0.1
3,317,680	-		SO3179	0.40	+0.4
3,317,680	-		SO3179	0.40	+0.3
3,317,680	-		SO3179	0.40	-0.5
3,317,680	-		SO3179	0.40	-0.9
3,317,680	-		SO3179	0.40	-0.9
3,317,680	-		SO3179	0.40	-1.2
3,317,680	-		SO3179	0.40	+0.2
3,317,680	-		SO3179	0.40	-0.4
3,317,680	-		SO3179	0.40	-0.2
3,317,680	-		SO3179	0.40	-0.4
3,317,680	-		SO3179	0.40	+0.1
3,317,680	-		SO3179	0.40	-0.4
3,317,680	-		SO3179	0.40	-0.5
3,317,680	-		SO3179	0.40	-0.0
3,317,680	-		SO3179	0.40	-2.1
3,317,680	-		SO3179	0.40	+1.3
3,317,680	-		SO3179	0.40	-0.3
3,317,680	-		SO3179	0.40	-0.4
3,317,680	-		SO3179	0.40	-1.3
3,317,680	-		SO3179	0.40	-0.6
3,317,680	-		SO3179	0.40	-1.1
3,317,680	-		SO3179	0.40	+0.3
3,317,680	-		SO3179	0.40	-2.0
3,317,680	-		SO3179	0.40	-0.3
3,317,680	-		SO3179	0.40	-0.9
3,317,765	-				+0.4
3,317,765	-		SO3179	0.47	-0.7
3,317,784	+		SO3179	0.48	-1.0
3,317,797	+		SO3179	0.49	+0.3
3,317,797	+		SO3179	0.49	-0.0
3,317,797	-		SO3179	0.49	-1.6
3,317,797	-		SO3179	0.49	-0.2
3,317,805	-		SO3179	0.50	-0.9
3,317,805	-		SO3179	0.50	+0.4
3,317,823	-		SO3179	0.51	-1.8
3,317,823	-		SO3179	0.51	-0.5
3,317,825	-		SO3179	0.51	-2.0
3,317,825	-		SO3179	0.51	-1.7
3,317,834	+		SO3179	0.52	-0.6
3,317,835	-		SO3179	0.52	-0.9
3,317,847	-		SO3179	0.53	-0.4
3,317,882	-		SO3179	0.56	-0.4
3,317,882	-		SO3179	0.56	-0.3
3,317,925	+		SO3179	0.59	+0.6
3,317,941	-		SO3179	0.61	-1.5
3,318,013	+		SO3179	0.66	+0.6
3,318,021	-		SO3179	0.67	-0.2
3,318,021	-		SO3179	0.67	-1.3
3,318,052	+		SO3179	0.69	+0.9
3,318,052	+		SO3179	0.69	+0.4
3,318,052	+		SO3179	0.69	-0.6
3,318,057	+		SO3179	0.70	-0.1
3,318,057	+		SO3179	0.70	-0.1
3,318,060	+		SO3179	0.70	-1.0
3,318,060	-		SO3179	0.70	-0.7
3,318,060	-		SO3179	0.70	-0.3
3,318,060	-		SO3179	0.70	-0.5
3,318,060	-		SO3179	0.70	+0.3
3,318,065	-		SO3179	0.70	-0.0
3,318,104	+		SO3179	0.74	-1.0
3,318,104	+		SO3179	0.74	-0.6
3,318,104	+		SO3179	0.74	-0.2
3,318,104	+		SO3179	0.74	-0.1
3,318,104	+		SO3179	0.74	-0.9
3,318,104	+		SO3179	0.74	-2.2
3,318,112	-		SO3179	0.74	+0.9
3,318,112	-		SO3179	0.74	-1.4
3,318,112	-		SO3179	0.74	-1.0
3,318,112	-		SO3179	0.74	-1.7
3,318,112	-		SO3179	0.74	-0.6
3,318,112	-		SO3179	0.74	+0.1
3,318,112	-		SO3179	0.74	-0.5
3,318,112	-		SO3179	0.74	-0.6
3,318,112	-		SO3179	0.74	-0.8
3,318,112	-		SO3179	0.74	-1.4
3,318,309	+				-0.3
3,318,344	+				+0.1
3,318,344	+				+0.1
3,318,347	-				-0.4
3,318,349	+				-1.0
3,318,352	-				-0.6
3,318,352	-				+0.1
3,318,352	-				-0.4
3,318,479	+				-1.4
3,318,479	+				-2.4
3,318,479	+				+0.3
3,318,479	+				+4.7
3,318,497	-				-1.1
3,318,497	-				+1.4
3,318,523	+				-1.7
3,318,523	+				+0.9
3,318,523	+				-1.4
3,318,531	-				-0.9
3,318,554	+				+2.7
3,318,557	-				-0.6
3,318,558	+				-0.8
3,318,570	+				-0.4
3,318,578	-				+0.8
3,318,585	-				-0.5
3,318,616	-				-2.1
3,318,617	+				-0.8
3,318,617	+				+0.9
3,318,643	+				+0.8
3,318,643	+				+0.0
3,318,683	-				-1.2
3,318,685	+				-0.2
3,318,685	+				-1.5
3,318,703	+				-0.2
3,318,709	+				+0.5
3,318,717	+				-2.2
3,318,717	+				+0.3
3,318,722	+				+1.0
3,318,725	-				+0.3
3,318,726	-				+0.9
3,318,732	+				+0.6
3,318,732	+				-0.4
3,318,732	+				-1.2
3,318,732	+				-0.1
3,318,732	+				+0.3
3,318,732	+				-0.6
3,318,733	+				-0.4
3,318,735	-				+0.1
3,318,740	-				+0.1
3,318,740	-				-2.3
3,318,740	-				-1.0
3,318,740	-				-0.5
3,318,740	-				+0.7
3,318,740	-				-0.6
3,318,740	-				-0.3
3,318,741	-				-0.3
3,318,741	-				-0.1
3,318,741	-				+0.0
3,318,757	-				+0.3
3,318,844	-				+0.3
3,318,854	-				-0.2
3,318,854	-				+0.3
3,318,912	-				+0.7
3,319,038	+				+0.4
3,319,077	+		SO3180	0.12	-0.2
3,319,080	+		SO3180	0.12	-0.1
3,319,080	+		SO3180	0.12	-0.9
3,319,080	+		SO3180	0.12	+1.1
3,319,080	+		SO3180	0.12	-0.4
3,319,085	-		SO3180	0.12	-1.7
3,319,085	-		SO3180	0.12	+0.0
3,319,085	-		SO3180	0.12	-0.0
3,319,088	-		SO3180	0.13	-0.1
3,319,088	-		SO3180	0.13	+0.5
3,319,088	-		SO3180	0.13	-1.5
3,319,088	-		SO3180	0.13	+1.0
3,319,088	-		SO3180	0.13	-0.4
3,319,130	-		SO3180	0.18	+0.1
3,319,185	+		SO3180	0.24	+0.6
3,319,205	-		SO3180	0.26	+0.9
3,319,225	+		SO3180	0.28	-2.1
3,319,226	+		SO3180	0.28	-1.0
3,319,233	-		SO3180	0.29	-0.1
3,319,233	-		SO3180	0.29	-0.8
3,319,233	-		SO3180	0.29	-0.1
3,319,235	+		SO3180	0.29	-0.9
3,319,235	+		SO3180	0.29	+0.4
3,319,243	-		SO3180	0.30	-0.4
3,319,243	-		SO3180	0.30	-1.0
3,319,243	-		SO3180	0.30	-0.4
3,319,243	-		SO3180	0.30	+1.4
3,319,243	-		SO3180	0.30	-0.8
3,319,243	-		SO3180	0.30	-1.6
3,319,247	+		SO3180	0.31	-0.3
3,319,248	-		SO3180	0.31	-1.0
3,319,254	+		SO3180	0.31	+0.9
3,319,254	-		SO3180	0.31	-1.6
3,319,254	-		SO3180	0.31	-1.1
3,319,254	-		SO3180	0.31	+0.0
3,319,262	-		SO3180	0.32	-0.5
3,319,262	-		SO3180	0.32	+0.9
3,319,276	-		SO3180	0.34	-0.4
3,319,281	-		SO3180	0.34	-2.0
3,319,375	+		SO3180	0.45	+0.9
3,319,383	-		SO3180	0.46	-0.3
3,319,383	-		SO3180	0.46	-1.4