Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0450 and SO0451 are separated by 311 nucleotides SO0451 and trxC overlap by 18 nucleotides trxC and fkbP-1 are separated by 174 nucleotides fkbP-1 and SO0454 overlap by 4 nucleotides SO0454 and SO0455 are separated by 42 nucleotides
SO0450: SO0450 - major facilitator family protein (NCBI ptt file), at 477,300 to 478,463
SO0450
SO0451: SO0451 - hypothetical protein (NCBI ptt file), at 478,775 to 478,927
SO0451
SO0452: trxC - thioredoxin 2 (NCBI ptt file), at 478,910 to 479,332
trxC
SO0453: fkbP-1 - peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file), at 479,507 to 479,842
fkbP-1
SO0454: SO0454 - conserved hypothetical protein (NCBI ptt file), at 479,839 to 480,261
SO0454
SO0455: SO0455 - hypothetical transporter (NCBI ptt file), at 480,304 to 482,337
SO0455
Position (kb) 478
479
480 Strain fitness (log2 ratio) -2
-1
0
1 at 478.047 kb on + strand, within SO0450 at 478.193 kb on + strand, within SO0450 at 478.201 kb on - strand, within SO0450 at 478.239 kb on + strand, within SO0450 at 478.278 kb on - strand, within SO0450 at 478.286 kb on + strand, within SO0450 at 478.336 kb on - strand, within SO0450 at 478.353 kb on - strand at 478.372 kb on - strand at 478.486 kb on - strand at 478.525 kb on + strand at 478.525 kb on + strand at 478.533 kb on - strand at 478.555 kb on - strand at 478.649 kb on + strand at 478.713 kb on - strand at 478.720 kb on - strand at 478.781 kb on - strand at 478.803 kb on + strand, within SO0451 at 478.807 kb on + strand, within SO0451 at 478.811 kb on - strand, within SO0451 at 478.931 kb on + strand at 478.939 kb on - strand at 478.947 kb on - strand at 478.949 kb on + strand at 479.063 kb on - strand, within trxC at 479.182 kb on - strand, within trxC at 479.296 kb on + strand at 479.304 kb on + strand at 479.396 kb on + strand at 479.415 kb on - strand at 479.462 kb on - strand at 479.569 kb on + strand, within fkbP-1 at 479.610 kb on - strand, within fkbP-1 at 479.614 kb on + strand, within fkbP-1 at 479.622 kb on - strand, within fkbP-1 at 479.668 kb on - strand, within fkbP-1 at 479.687 kb on + strand, within fkbP-1 at 479.729 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.744 kb on + strand, within fkbP-1 at 479.749 kb on + strand, within fkbP-1 at 479.883 kb on - strand, within SO0454 at 479.888 kb on + strand, within SO0454 at 479.921 kb on - strand, within SO0454 at 479.931 kb on + strand, within SO0454 at 479.941 kb on - strand, within SO0454 at 479.981 kb on - strand, within SO0454 at 480.011 kb on + strand, within SO0454 at 480.120 kb on - strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.130 kb on + strand, within SO0454 at 480.137 kb on + strand, within SO0454 at 480.226 kb on + strand at 480.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM remove 478,047 + SO0450 0.64 -0.2 478,193 + SO0450 0.77 -0.1 478,201 - SO0450 0.77 -0.6 478,239 + SO0450 0.81 +0.2 478,278 - SO0450 0.84 +1.1 478,286 + SO0450 0.85 +0.7 478,336 - SO0450 0.89 -0.6 478,353 - -0.4 478,372 - +0.6 478,486 - -0.1 478,525 + +0.0 478,525 + +0.6 478,533 - -0.2 478,555 - -1.0 478,649 + -0.2 478,713 - -0.6 478,720 - +0.2 478,781 - -0.1 478,803 + SO0451 0.18 -0.2 478,807 + SO0451 0.21 -0.3 478,811 - SO0451 0.24 +0.2 478,931 + +0.5 478,939 - +0.4 478,947 - -2.3 478,949 + -0.3 479,063 - trxC SO0452 0.36 -1.0 479,182 - trxC SO0452 0.64 -0.3 479,296 + -2.5 479,304 + -1.1 479,396 + +0.1 479,415 - +0.5 479,462 - +0.5 479,569 + fkbP-1 SO0453 0.18 -0.5 479,610 - fkbP-1 SO0453 0.31 -0.5 479,614 + fkbP-1 SO0453 0.32 +0.6 479,622 - fkbP-1 SO0453 0.34 -0.3 479,668 - fkbP-1 SO0453 0.48 -1.7 479,687 + fkbP-1 SO0453 0.54 +0.6 479,729 + fkbP-1 SO0453 0.66 -0.1 479,744 + fkbP-1 SO0453 0.71 -0.7 479,744 + fkbP-1 SO0453 0.71 +0.7 479,749 + fkbP-1 SO0453 0.72 +0.4 479,883 - SO0454 0.10 +0.1 479,888 + SO0454 0.12 -0.4 479,921 - SO0454 0.19 -0.3 479,931 + SO0454 0.22 -0.5 479,941 - SO0454 0.24 +0.2 479,981 - SO0454 0.34 +0.6 480,011 + SO0454 0.41 +0.8 480,120 - SO0454 0.66 +0.5 480,130 + SO0454 0.69 +0.6 480,130 + SO0454 0.69 -0.5 480,130 + SO0454 0.69 +0.1 480,130 + SO0454 0.69 +0.8 480,137 + SO0454 0.70 +0.4 480,226 + -0.7 480,309 - -0.1
Or see this region's nucleotide sequence