Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0296 and SO0297 are separated by 18 nucleotides SO0297 and gmhA overlap by 4 nucleotides gmhA and SO0299 are separated by 106 nucleotides
SO0296: SO0296 - integral membrane domain protein (NCBI ptt file), at 302,102 to 303,025
SO0296
SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610
SO0297
SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200
gmhA
SO0299: SO0299 - conserved hypothetical protein TIGR00252 (NCBI ptt file), at 304,307 to 304,633
SO0299
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.109 kb on + strand at 302.176 kb on + strand at 302.305 kb on + strand, within SO0296 at 302.305 kb on + strand, within SO0296 at 302.305 kb on + strand, within SO0296 at 302.313 kb on - strand, within SO0296 at 302.322 kb on - strand, within SO0296 at 302.332 kb on - strand, within SO0296 at 302.366 kb on - strand, within SO0296 at 302.368 kb on + strand, within SO0296 at 302.368 kb on + strand, within SO0296 at 302.376 kb on - strand, within SO0296 at 302.376 kb on - strand, within SO0296 at 302.444 kb on - strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.449 kb on + strand, within SO0296 at 302.477 kb on + strand, within SO0296 at 302.505 kb on + strand, within SO0296 at 302.505 kb on + strand, within SO0296 at 302.529 kb on + strand, within SO0296 at 302.529 kb on + strand, within SO0296 at 302.537 kb on - strand, within SO0296 at 302.537 kb on - strand, within SO0296 at 302.601 kb on + strand, within SO0296 at 302.623 kb on - strand, within SO0296 at 302.675 kb on + strand, within SO0296 at 302.691 kb on - strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.707 kb on + strand, within SO0296 at 302.715 kb on - strand, within SO0296 at 302.722 kb on + strand, within SO0296 at 302.728 kb on - strand, within SO0296 at 302.752 kb on - strand, within SO0296 at 302.767 kb on + strand, within SO0296 at 302.862 kb on + strand, within SO0296 at 302.999 kb on + strand at 303.001 kb on + strand at 303.020 kb on + strand at 303.021 kb on - strand at 303.021 kb on - strand at 303.111 kb on + strand, within SO0297 at 303.124 kb on - strand, within SO0297 at 303.190 kb on + strand, within SO0297 at 303.313 kb on + strand, within SO0297 at 303.339 kb on + strand, within SO0297 at 303.360 kb on - strand, within SO0297 at 303.550 kb on - strand, within SO0297 at 303.566 kb on - strand at 303.600 kb on + strand at 303.799 kb on + strand, within gmhA at 303.809 kb on + strand, within gmhA at 304.090 kb on + strand, within gmhA at 304.571 kb on + strand, within SO0299 at 304.579 kb on - strand, within SO0299 at 304.593 kb on - strand, within SO0299
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM remove 302,109 + +0.8 302,176 + +0.0 302,305 + SO0296 0.22 -0.0 302,305 + SO0296 0.22 +0.2 302,305 + SO0296 0.22 +0.4 302,313 - SO0296 0.23 -0.3 302,322 - SO0296 0.24 +0.2 302,332 - SO0296 0.25 -0.4 302,366 - SO0296 0.29 +0.3 302,368 + SO0296 0.29 +0.3 302,368 + SO0296 0.29 -0.6 302,376 - SO0296 0.30 -0.3 302,376 - SO0296 0.30 -0.2 302,444 - SO0296 0.37 -0.3 302,449 + SO0296 0.38 +0.1 302,449 + SO0296 0.38 -0.4 302,449 + SO0296 0.38 -0.3 302,477 + SO0296 0.41 -1.0 302,505 + SO0296 0.44 +1.2 302,505 + SO0296 0.44 -1.6 302,529 + SO0296 0.46 -0.0 302,529 + SO0296 0.46 -0.5 302,537 - SO0296 0.47 +0.4 302,537 - SO0296 0.47 +0.1 302,601 + SO0296 0.54 -0.1 302,623 - SO0296 0.56 +0.2 302,675 + SO0296 0.62 +0.6 302,691 - SO0296 0.64 -0.1 302,697 + SO0296 0.64 -0.6 302,697 + SO0296 0.64 -0.2 302,707 + SO0296 0.65 -0.0 302,715 - SO0296 0.66 -0.4 302,722 + SO0296 0.67 -0.3 302,728 - SO0296 0.68 +0.8 302,752 - SO0296 0.70 +0.6 302,767 + SO0296 0.72 +0.9 302,862 + SO0296 0.82 +0.4 302,999 + +0.6 303,001 + -0.7 303,020 + +0.6 303,021 - -0.6 303,021 - -0.0 303,111 + SO0297 0.12 -1.9 303,124 - SO0297 0.14 -0.9 303,190 + SO0297 0.26 +0.3 303,313 + SO0297 0.47 -0.7 303,339 + SO0297 0.52 -0.9 303,360 - SO0297 0.56 -0.6 303,550 - SO0297 0.89 +0.3 303,566 - -0.4 303,600 + -2.6 303,799 + gmhA SO0298 0.32 -0.4 303,809 + gmhA SO0298 0.34 +1.8 304,090 + gmhA SO0298 0.81 -0.1 304,571 + SO0299 0.81 -0.5 304,579 - SO0299 0.83 -0.1 304,593 - SO0299 0.87 +0.1
Or see this region's nucleotide sequence