Strain Fitness in Shewanella oneidensis MR-1 around SO0297

Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0296 and SO0297 are separated by 18 nucleotidesSO0297 and gmhA overlap by 4 nucleotidesgmhA and SO0299 are separated by 106 nucleotides SO0296: SO0296 - integral membrane domain protein (NCBI ptt file), at 302,102 to 303,025 SO0296 SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610 SO0297 SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200 gmhA SO0299: SO0299 - conserved hypothetical protein TIGR00252 (NCBI ptt file), at 304,307 to 304,633 SO0299 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 302.109 kb on + strandat 302.176 kb on + strandat 302.305 kb on + strand, within SO0296at 302.305 kb on + strand, within SO0296at 302.305 kb on + strand, within SO0296at 302.313 kb on - strand, within SO0296at 302.322 kb on - strand, within SO0296at 302.332 kb on - strand, within SO0296at 302.366 kb on - strand, within SO0296at 302.368 kb on + strand, within SO0296at 302.368 kb on + strand, within SO0296at 302.376 kb on - strand, within SO0296at 302.376 kb on - strand, within SO0296at 302.444 kb on - strand, within SO0296at 302.449 kb on + strand, within SO0296at 302.449 kb on + strand, within SO0296at 302.449 kb on + strand, within SO0296at 302.477 kb on + strand, within SO0296at 302.505 kb on + strand, within SO0296at 302.505 kb on + strand, within SO0296at 302.529 kb on + strand, within SO0296at 302.529 kb on + strand, within SO0296at 302.537 kb on - strand, within SO0296at 302.537 kb on - strand, within SO0296at 302.601 kb on + strand, within SO0296at 302.623 kb on - strand, within SO0296at 302.675 kb on + strand, within SO0296at 302.691 kb on - strand, within SO0296at 302.697 kb on + strand, within SO0296at 302.697 kb on + strand, within SO0296at 302.707 kb on + strand, within SO0296at 302.715 kb on - strand, within SO0296at 302.722 kb on + strand, within SO0296at 302.728 kb on - strand, within SO0296at 302.752 kb on - strand, within SO0296at 302.767 kb on + strand, within SO0296at 302.862 kb on + strand, within SO0296at 302.999 kb on + strandat 303.001 kb on + strandat 303.020 kb on + strandat 303.021 kb on - strandat 303.021 kb on - strandat 303.111 kb on + strand, within SO0297at 303.124 kb on - strand, within SO0297at 303.190 kb on + strand, within SO0297at 303.313 kb on + strand, within SO0297at 303.339 kb on + strand, within SO0297at 303.360 kb on - strand, within SO0297at 303.550 kb on - strand, within SO0297at 303.566 kb on - strandat 303.600 kb on + strandat 303.799 kb on + strand, within gmhAat 303.809 kb on + strand, within gmhAat 304.090 kb on + strand, within gmhAat 304.571 kb on + strand, within SO0299at 304.579 kb on - strand, within SO0299at 304.593 kb on - strand, within SO0299

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM
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302,109 + +0.8
302,176 + +0.0
302,305 + SO0296 0.22 -0.0
302,305 + SO0296 0.22 +0.2
302,305 + SO0296 0.22 +0.4
302,313 - SO0296 0.23 -0.3
302,322 - SO0296 0.24 +0.2
302,332 - SO0296 0.25 -0.4
302,366 - SO0296 0.29 +0.3
302,368 + SO0296 0.29 +0.3
302,368 + SO0296 0.29 -0.6
302,376 - SO0296 0.30 -0.3
302,376 - SO0296 0.30 -0.2
302,444 - SO0296 0.37 -0.3
302,449 + SO0296 0.38 +0.1
302,449 + SO0296 0.38 -0.4
302,449 + SO0296 0.38 -0.3
302,477 + SO0296 0.41 -1.0
302,505 + SO0296 0.44 +1.2
302,505 + SO0296 0.44 -1.6
302,529 + SO0296 0.46 -0.0
302,529 + SO0296 0.46 -0.5
302,537 - SO0296 0.47 +0.4
302,537 - SO0296 0.47 +0.1
302,601 + SO0296 0.54 -0.1
302,623 - SO0296 0.56 +0.2
302,675 + SO0296 0.62 +0.6
302,691 - SO0296 0.64 -0.1
302,697 + SO0296 0.64 -0.6
302,697 + SO0296 0.64 -0.2
302,707 + SO0296 0.65 -0.0
302,715 - SO0296 0.66 -0.4
302,722 + SO0296 0.67 -0.3
302,728 - SO0296 0.68 +0.8
302,752 - SO0296 0.70 +0.6
302,767 + SO0296 0.72 +0.9
302,862 + SO0296 0.82 +0.4
302,999 + +0.6
303,001 + -0.7
303,020 + +0.6
303,021 - -0.6
303,021 - -0.0
303,111 + SO0297 0.12 -1.9
303,124 - SO0297 0.14 -0.9
303,190 + SO0297 0.26 +0.3
303,313 + SO0297 0.47 -0.7
303,339 + SO0297 0.52 -0.9
303,360 - SO0297 0.56 -0.6
303,550 - SO0297 0.89 +0.3
303,566 - -0.4
303,600 + -2.6
303,799 + gmhA SO0298 0.32 -0.4
303,809 + gmhA SO0298 0.34 +1.8
304,090 + gmhA SO0298 0.81 -0.1
304,571 + SO0299 0.81 -0.5
304,579 - SO0299 0.83 -0.1
304,593 - SO0299 0.87 +0.1

Or see this region's nucleotide sequence