Strain Fitness in Shewanella oneidensis MR-1 around SO_3098

Experiment: 1-ethyl-3-methylimidazolium chloride 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3097.3 and SO3097.4 overlap by 4 nucleotidesSO3097.4 and SO_3098 are separated by 2 nucleotidesSO_3098 and SO3099 are separated by 340 nucleotides SO3097.3: SO3097.3 - hypothetical sodium/proline symporter (NCBI ptt file), at 3,223,508 to 3,223,855 SO3097.3 SO3097.4: SO3097.4 - hypothetical sodium/proline symporter (NCBI ptt file), at 3,223,852 to 3,224,592 SO3097.4 SO_3098: SO_3098 - no description, at 3,224,595 to 3,224,753 _3098 SO3099: SO3099 - long-chain fatty acid transport protein, putative (NCBI ptt file), at 3,225,094 to 3,226,416 SO3099 Position (kb) 3224 3225Strain fitness (log2 ratio) -1 0 1at 3223.672 kb on + strand, within SO3097.3at 3223.749 kb on + strand, within SO3097.3at 3223.788 kb on + strand, within SO3097.3at 3224.075 kb on - strand, within SO3097.4at 3224.075 kb on - strand, within SO3097.4at 3224.094 kb on - strand, within SO3097.4at 3224.116 kb on + strand, within SO3097.4at 3224.300 kb on + strand, within SO3097.4at 3224.324 kb on + strand, within SO3097.4at 3224.388 kb on + strand, within SO3097.4at 3224.677 kb on + strand, within SO_3098at 3224.696 kb on + strand, within SO_3098at 3224.799 kb on - strandat 3224.973 kb on + strandat 3225.124 kb on + strandat 3225.193 kb on + strandat 3225.193 kb on + strandat 3225.193 kb on + strandat 3225.388 kb on + strand, within SO3099at 3225.406 kb on - strand, within SO3099at 3225.406 kb on - strand, within SO3099at 3225.477 kb on + strand, within SO3099at 3225.493 kb on + strand, within SO3099at 3225.685 kb on - strand, within SO3099

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 40 mM
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3,223,672 + SO3097.3 0.47 +0.2
3,223,749 + SO3097.3 0.69 +0.2
3,223,788 + SO3097.3 0.80 -0.1
3,224,075 - SO3097.4 0.30 -1.4
3,224,075 - SO3097.4 0.30 +0.4
3,224,094 - SO3097.4 0.33 -0.3
3,224,116 + SO3097.4 0.36 -1.2
3,224,300 + SO3097.4 0.60 -0.2
3,224,324 + SO3097.4 0.64 -1.0
3,224,388 + SO3097.4 0.72 +0.8
3,224,677 + SO_3098 0.52 -1.1
3,224,696 + SO_3098 0.64 -0.8
3,224,799 - +0.0
3,224,973 + -0.0
3,225,124 + -1.7
3,225,193 + -0.3
3,225,193 + +0.3
3,225,193 + +0.7
3,225,388 + SO3099 0.22 -0.9
3,225,406 - SO3099 0.24 +0.4
3,225,406 - SO3099 0.24 -0.1
3,225,477 + SO3099 0.29 +0.4
3,225,493 + SO3099 0.30 -0.2
3,225,685 - SO3099 0.45 +0.3

Or see this region's nucleotide sequence