Strain Fitness in Shewanella oneidensis MR-1 around SO3083

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium acetate 20 mM
3,201,043	+		SO3081	0.62	-0.1
3,201,051	-		SO3081	0.64	+0.5
3,201,085	-		SO3081	0.70	+0.3
3,201,098	-		SO3081	0.73	-0.3
3,201,150	+		SO3081	0.82	+0.9
3,201,150	+		SO3081	0.82	-1.0
3,201,158	-		SO3081	0.84	-0.6
3,201,158	-		SO3081	0.84	+0.7
3,201,400	-	sixA	SO3082	0.17	-0.2
3,201,424	-	sixA	SO3082	0.22	-0.8
3,201,424	-				+0.4
3,201,436	-	sixA	SO3082	0.24	-1.0
3,201,490	+	sixA	SO3082	0.36	-1.6
3,201,498	-	sixA	SO3082	0.38	-2.7
3,201,536	-	sixA	SO3082	0.46	-0.6
3,201,550	+	sixA	SO3082	0.49	-2.0
3,201,690	+	sixA	SO3082	0.78	-0.2
3,201,690	+	sixA	SO3082	0.78	+0.6
3,201,727	+	sixA	SO3082	0.86	-0.9
3,201,734	-	sixA	SO3082	0.88	-1.2
3,201,736	+	sixA	SO3082	0.88	-0.0
3,201,812	-				-0.1
3,201,814	+				-0.5
3,201,889	+				+2.0
3,201,997	-				-1.6
3,202,247	+		SO3083	0.10	-2.1
3,202,260	-		SO3083	0.11	-0.6
3,202,301	+		SO3083	0.12	-1.2
3,202,429	-		SO3083	0.17	-1.8
3,202,453	-		SO3083	0.18	-0.9
3,202,499	-		SO3083	0.19	-1.3
3,202,515	+		SO3083	0.20	-1.8
3,202,515	+		SO3083	0.20	-1.5
3,202,515	+		SO3083	0.20	-1.3
3,202,515	+		SO3083	0.20	-1.3
3,202,523	-		SO3083	0.20	-1.1
3,202,523	-		SO3083	0.20	-1.3
3,202,556	+		SO3083	0.21	+0.9
3,202,575	+		SO3083	0.22	-1.1
3,202,575	+		SO3083	0.22	-1.9
3,202,583	-		SO3083	0.22	-1.4
3,202,724	+		SO3083	0.27	-2.6
3,202,732	-		SO3083	0.28	-2.2
3,202,824	-		SO3083	0.31	-1.2
3,202,830	+		SO3083	0.31	-0.7
3,202,854	+		SO3083	0.32	-1.5
3,202,869	-		SO3083	0.33	-0.7
3,202,899	+		SO3083	0.34	-2.3
3,202,906	+		SO3083	0.34	-1.5
3,202,907	-		SO3083	0.34	-0.8
3,202,907	-		SO3083	0.34	-1.0
3,202,988	+		SO3083	0.37	-1.4
3,202,996	-		SO3083	0.37	-1.7
3,202,996	-		SO3083	0.37	-1.2
3,203,023	+		SO3083	0.38	-0.5
3,203,031	-		SO3083	0.38	-0.8
3,203,134	-		SO3083	0.42	-1.1
3,203,143	-		SO3083	0.42	-0.0
3,203,180	+		SO3083	0.44	-1.3
3,203,180	+		SO3083	0.44	-1.1
3,203,188	-		SO3083	0.44	-0.4
3,203,188	-		SO3083	0.44	-1.2
3,203,188	-		SO3083	0.44	-1.7
3,203,188	-		SO3083	0.44	-0.4
3,203,188	-		SO3083	0.44	-1.3
3,203,188	-		SO3083	0.44	-1.7
3,203,188	-		SO3083	0.44	-1.3
3,203,188	-		SO3083	0.44	-0.7
3,203,188	-		SO3083	0.44	-1.3
3,203,321	-		SO3083	0.49	-2.1
3,203,391	-		SO3083	0.51	-0.4
3,203,405	+		SO3083	0.52	-2.2
3,203,534	+		SO3083	0.56	-1.2
3,203,534	+		SO3083	0.56	-1.2
3,203,534	+		SO3083	0.56	-2.3
3,203,542	-		SO3083	0.57	-0.5
3,203,542	-		SO3083	0.57	-0.9
3,203,542	-		SO3083	0.57	-0.0
3,203,574	+		SO3083	0.58	-2.4
3,203,577	-		SO3083	0.58	-1.5
3,203,577	-		SO3083	0.58	-1.0
3,203,577	-		SO3083	0.58	-1.0
3,203,582	-		SO3083	0.58	-2.1
3,203,649	-		SO3083	0.61	-2.2
3,203,655	+		SO3083	0.61	-0.4
3,203,663	-		SO3083	0.61	-1.1
3,203,675	+		SO3083	0.61	-1.1
3,203,683	-		SO3083	0.62	-0.6
3,203,717	+		SO3083	0.63	-1.4
3,203,718	+		SO3083	0.63	+0.8
3,203,791	+		SO3083	0.66	-1.1
3,203,794	-		SO3083	0.66	-0.3
3,203,889	+		SO3083	0.69	-1.7
3,203,889	+		SO3083	0.69	-1.6
3,203,897	-		SO3083	0.69	-0.8
3,204,019	+		SO3083	0.74	-1.5
3,204,036	-		SO3083	0.74	+0.2
3,204,114	-		SO3083	0.77	-1.7
3,204,115	-		SO3083	0.77	+1.0
3,204,126	+		SO3083	0.78	+0.4
3,204,134	-		SO3083	0.78	-1.7
3,204,136	+		SO3083	0.78	-0.9
3,204,144	-		SO3083	0.78	-0.9
3,204,144	-		SO3083	0.78	-1.7
3,204,209	+		SO3083	0.81	-0.7
3,204,239	+		SO3083	0.82	-0.4
3,204,239	+		SO3083	0.82	-1.2
3,204,262	+		SO3083	0.82	-0.4
3,204,262	+		SO3083	0.82	-2.6
3,204,276	+		SO3083	0.83	-0.4
3,204,289	-		SO3083	0.83	-2.8
3,204,341	+		SO3083	0.85	-0.9
3,204,349	-		SO3083	0.86	-0.7
3,204,362	-		SO3083	0.86	-2.9
3,204,432	-		SO3083	0.89	-2.0
3,204,434	+		SO3083	0.89	-1.4
3,204,442	-		SO3083	0.89	-1.2
3,204,480	+				-0.2
3,204,480	+				-2.0
3,204,480	+				-2.2
3,204,488	+				-1.7
3,204,512	+				-1.2
3,204,653	-				-1.0
3,204,661	+				-1.6
3,204,663	-				-1.6
3,204,668	-				-0.4
3,204,707	+				+0.1
3,204,708	+				-1.1
3,204,828	+				-0.4
3,204,841	-				-0.1
3,204,847	-				+0.7
3,204,869	+				-0.9
3,204,927	-				+0.3
3,204,997	+				+0.5
3,205,005	-				-0.3
3,205,020	+				-0.9
3,205,025	+				+1.0
3,205,025	+				+0.7
3,205,028	-				-0.8
3,205,030	+				+0.4
3,205,033	-				-0.2
3,205,033	-				+0.5
3,205,033	-				+0.0
3,205,033	-				-0.3
3,205,033	-				-0.2
3,205,033	-				+0.9
3,205,038	-				+0.2
3,205,038	-				+1.1
3,205,045	-				+1.1
3,205,079	+				-0.2
3,205,079	+				-0.1
3,205,080	-				+0.5
3,205,087	+				-0.6
3,205,087	+				-0.8
3,205,087	+				+0.4
3,205,087	+				-0.3
3,205,095	-				-0.6
3,205,095	-				+1.0
3,205,095	-				-0.7
3,205,099	-				+0.6
3,205,117	+				+0.1
3,205,117	+				+0.6
3,205,117	+				-0.4
3,205,117	+				+0.6
3,205,117	+				+0.2
3,205,125	+				+0.6
3,205,125	-				+0.2
3,205,125	-				-1.1
3,205,125	-				+0.4
3,205,125	-				-0.0
3,205,125	-				+0.2
3,205,133	-				-1.1
3,205,138	-				+0.5
3,205,160	+				+0.0
3,205,183	-				+0.2
3,205,185	-				+0.4
3,205,192	+				-1.2
3,205,198	+				-0.5
3,205,200	-				+0.2
3,205,200	-				+0.0
3,205,200	-				+0.5
3,205,206	+				+0.3
3,205,206	+				-0.6
3,205,211	+				-1.0
3,205,214	-				+0.4
3,205,214	-				-0.9
3,205,226	+				-0.2
3,205,226	+				-0.8
3,205,226	+				-0.1
3,205,226	+				+0.3
3,205,226	+				+1.1
3,205,226	+				+0.2
3,205,226	+				+0.9
3,205,226	+				+0.2
3,205,226	+				-0.7
3,205,226	+				+0.8
3,205,226	+				-1.4
3,205,226	+				-0.8
3,205,226	+				+1.3
3,205,226	+				+0.4
3,205,234	-				+0.7
3,205,234	-				-0.8
3,205,249	+				+0.5
3,205,256	-				-0.0
3,205,258	+				-1.0
3,205,258	+				+0.4
3,205,313	+				+0.4
3,205,313	+				-0.3
3,205,321	+				+0.3
3,205,321	-				+0.0
3,205,321	-				+0.1
3,205,374	+				+1.1
3,205,381	+				-0.5
3,205,382	-				+1.1
3,205,386	+				+0.8
3,205,386	+				-0.4
3,205,386	+				-0.7
3,205,389	-				+0.1
3,205,389	-				+1.0
3,205,389	-				+0.7
3,205,389	-				-0.0
3,205,389	-				+0.7
3,205,389	-				+0.9
3,205,389	-				+0.3
3,205,394	-				+0.1
3,205,395	+				-1.0
3,205,395	+				-0.3
3,205,397	-				-1.3
3,205,397	-				+0.9
3,205,403	-				+0.8
3,205,421	+				-2.2
3,205,426	+				-0.0
3,205,426	+				-1.4
3,205,426	+				+0.4
3,205,431	+				-0.8
3,205,431	+				+0.8
3,205,431	+				-0.1
3,205,431	+				+3.2
3,205,431	+				+0.6
3,205,431	+				+1.0
3,205,431	+				-0.0
3,205,431	+				+0.1
3,205,431	+				+1.8
3,205,431	+				-0.1
3,205,431	+				+0.2
3,205,431	+				+0.7
3,205,431	+				-1.2
3,205,431	+				+0.4
3,205,431	+				-0.2
3,205,431	+				-0.3
3,205,431	+				-0.3
3,205,431	+				-0.1
3,205,431	+				-0.2
3,205,431	+				-0.4
3,205,431	+				-0.3
3,205,431	+				+0.4
3,205,431	+				-0.2
3,205,431	+				-0.3
3,205,431	+				-0.5
3,205,431	+				-1.7
3,205,431	+				+0.4
3,205,431	+				-0.5
3,205,431	+				+0.2
3,205,431	+				-1.2
3,205,431	+				+0.0
3,205,431	+				+0.3
3,205,431	+				-1.7
3,205,431	+				+0.3
3,205,434	-				+0.9
3,205,434	-				+0.3
3,205,436	+				+0.5
3,205,436	+				+1.2
3,205,439	-				-0.1
3,205,439	-				+0.7
3,205,439	-				-0.4
3,205,439	-				+0.8
3,205,439	-				-1.0
3,205,439	-				+0.6
3,205,439	-				+0.0
3,205,439	-				+0.1
3,205,439	-				+0.5
3,205,439	-				+0.9
3,205,439	-				+0.1
3,205,439	-				-0.0
3,205,439	-				-0.5
3,205,439	-				-0.2
3,205,439	-				-0.1
3,205,439	-				-0.1
3,205,439	-				+0.5
3,205,439	-				+0.3
3,205,439	-				+0.9
3,205,439	-				+0.0
3,205,439	-				-1.3
3,205,439	-				-0.0
3,205,439	-				+1.0
3,205,439	-				-0.3
3,205,439	-				-0.4
3,205,439	-				-0.2
3,205,439	-				-1.2
3,205,439	-				+0.7
3,205,439	-				-1.0
3,205,439	-				+0.5
3,205,439	-				-0.2
3,205,439	-				-3.0
3,205,439	-				+0.8
3,205,439	-				+1.2
3,205,439	-				-0.1
3,205,439	-				+0.7
3,205,439	-				-1.5
3,205,439	-				-0.4
3,205,439	-				-1.0
3,205,439	-				-0.4
3,205,439	-				+0.3
3,205,439	-				+0.1
3,205,442	-				+0.1
3,205,443	+				+0.6
3,205,443	+				+0.4
3,205,443	+				+0.3
3,205,444	+				+0.5
3,205,456	+				+0.4
3,205,477	+		SO3084	0.10	+0.2
3,205,477	+		SO3084	0.10	-0.6
3,205,477	+		SO3084	0.10	+1.2
3,205,478	-		SO3084	0.10	+0.3
3,205,496	+		SO3084	0.11	+0.1
3,205,500	-		SO3084	0.11	+0.7
3,205,501	-		SO3084	0.11	+0.3
3,205,516	+		SO3084	0.11	+0.2
3,205,522	-		SO3084	0.11	+0.3
3,205,529	-		SO3084	0.12	+0.6
3,205,530	+		SO3084	0.12	-0.5
3,205,530	+		SO3084	0.12	+0.1
3,205,530	+		SO3084	0.12	+0.4
3,205,530	+		SO3084	0.12	+1.2
3,205,530	+		SO3084	0.12	+0.3
3,205,530	+		SO3084	0.12	-0.2
3,205,530	+		SO3084	0.12	+0.0
3,205,530	+		SO3084	0.12	+1.1
3,205,531	+		SO3084	0.12	+0.7
3,205,531	+		SO3084	0.12	-0.0
3,205,531	+		SO3084	0.12	+0.4
3,205,531	+		SO3084	0.12	-0.3
3,205,531	+		SO3084	0.12	+0.3
3,205,531	+		SO3084	0.12	-0.5
3,205,531	+		SO3084	0.12	+0.4
3,205,531	+		SO3084	0.12	+0.2
3,205,531	+		SO3084	0.12	+0.1
3,205,531	+		SO3084	0.12	-0.7
3,205,531	+		SO3084	0.12	+0.5
3,205,531	+		SO3084	0.12	+0.8
3,205,538	-		SO3084	0.12	-0.6
3,205,538	-		SO3084	0.12	+0.4
3,205,538	-		SO3084	0.12	+0.6
3,205,539	-		SO3084	0.12	+0.6
3,205,539	-		SO3084	0.12	-0.0
3,205,539	-		SO3084	0.12	+0.1
3,205,539	-		SO3084	0.12	-0.8
3,205,539	-		SO3084	0.12	+0.5
3,205,539	-		SO3084	0.12	+1.6
3,205,539	-		SO3084	0.12	-1.2
3,205,539	-		SO3084	0.12	+0.1
3,205,539	-		SO3084	0.12	+0.2
3,205,539	-		SO3084	0.12	-0.5
3,205,543	+		SO3084	0.12	+0.1
3,205,544	-		SO3084	0.12	+0.6
3,205,650	-		SO3084	0.14	-0.3
3,205,715	+		SO3084	0.16	+1.2